BioAFMviewer: An interactive interface for simulated AFM scanning of biomolecular structures and dynamics. - Romain Amyot; Holger Flechsig (PLoS Comput. Biol., 2020)

Simulation atomic force microscopy for atomic reconstruction of biomolecular structures from resolution-limited experimental images. - Romain Amyot; Arin Marchesi; Clemens M. Franz; Ignacio Casuso; Holger Flechsig (PLoS Comput. Biol., 2022)

Atom Filtering Algorithm and GPU-Accelerated Calculation of Simulation Atomic Force Microscopy Images. - Romain Amyot; Noriyuki Kodera; Holger Flechsig (Algorithms, 2024)