MEtaData Format for Open Reef Data (MEDFORD). - Polina Shpilker; John Freeman; Hailey McKelvie; Jill Ashey; Jay-Miguel Fonticella; Hollie Putnam; Jane Greenberg; Lenore Cowen; Alva L. Couch; Noah M. Daniels (MTSR, 2021)

Bioinformatics of corals: Investigating heterogeneous omics data from coral holobionts for insight into reef health and resillience. - Lenore J. Cowen; Judith Klein-Seetharaman; Hollie Putnam (PSB, 2021)

MEDFORD: A human- and machine-readable metadata markup language. - Polina Shpilker; John Freeman; Hailey McKelvie; Jill Ashey; Jay-Miguel Fonticella; Hollie Putnam; Jane Greenberg; Lenore Cowen; Alva L. Couch; Noah M. Daniels (Database J. Biol. Databases Curation, 2022)

Decoding the Functional Interactome of Non-model Organisms with PHILHARMONIC. - Samuel Sledzieski; Charlotte Versavel; Rohit Singh 001; Faith Ocitti; Kapil Devkota; Lokender Kumar; Polina Shpilker; Liza Roger; Jinkyu Yang; Nastassja Lewinski; Hollie Putnam; Bonnie Berger; et al. (RECOMB, 2025)