Noise-Induced Collective Migration for Neural Crest Cells. - Masataka Yamao; Honda Naoki; Shin Ishii (ICANN (1), 2010)

A multiphysical model of cell migration integrating reaction-diffusion, membrane and cytoskeleton. - Seigo Nonaka; Honda Naoki; Shin Ishii (Neural Networks, 2011)

Uncertainty-Dependent Extinction of Fear Memory in an Amygdala-mPFC Neural Circuit Model. - Yu-zhe Li; Ken Nakae; Shin Ishii; Honda Naoki (PLoS Comput. Biol., 2016)

Revisiting chemoaffinity theory: Chemotactic implementation of topographic axonal projection. - Honda Naoki (PLoS Comput. Biol., 2017)

Identification of animal behavioral strategies by inverse reinforcement learning. - Shoichiro Yamaguchi; Honda Naoki; Muneki Ikeda; Yuki Tsukada; Shunji Nakano; Ikue Mori; Shin Ishii (PLoS Comput. Biol., 2018)

Noise-resistant developmental reproducibility in vertebrate somite formation. - Honda Naoki; Ryutaro Akiyama; Dini Wahyu Kartika Sari; Shin Ishii; Yasumasa Bessho; Takaaki Matsui (PLoS Comput. Biol., 2019)

Decoding reward-curiosity conflict in decision-making from irrational behaviors. - Yuki Konaka; Honda Naoki (Nat. Comput. Sci., 2023)

Multidimensional fractal scaling analysis using higher order moving average polynomials and its fast algorithm. - Hanqiu Ju; Honda Naoki; Shige H. Yoshimura; Miki Kaneko; Taiki Shigematsu; Ken Kiyono (Signal Process., 2023)