Image-based early predictions of functional properties in cell manufacturing. - Hong Seo Lim; Madeline E. Smerchansky; Jingxuan Zhou; Paramita Chatterjee; Angela C. Jimenez; Xingyu Yang; Krishnendu Roy; Peng Qiu (BIBM, 2020)

JSOM: Jointly-evolving self-organizing maps for alignment of biological datasets and identification of related clusters. - Hong Seo Lim; Peng Qiu (PLoS Comput. Biol., 2021)

Developing Graph-based Computational Algorithms for Single-cell Data Science. - Hong Seo Lim (2023)

Quantifying Cell-Type-Specific Differences of Single-Cell Datasets Using Uniform Manifold Approximation and Projection for Dimension Reduction and Shapley Additive exPlanations. - Hong Seo Lim; Peng Qiu (J. Comput. Biol., 2023)

Quantifying the clusterness and trajectoriness of single-cell RNA-seq data. - Hong Seo Lim; Peng Qiu (PLoS Comput. Biol., 2024)