iPhos: a toolkit to streamline the alkaline phosphatase-assisted comprehensive LC-MS phosphoproteome investigation. - Tzu-Hsien Yang; Hong-Tsun Chang; Eric S. L. Hsiao; Juo-Ling Sun; Chung-Ching Wang; Hsin-Yi Wu; Pao-Chi Liao; Wei-Sheng Wu (BMC Bioinform., 2014)

A comprehensive performance evaluation on the prediction results of existing cooperative transcription factors identification algorithms. - Fu-Jou Lai; Hong-Tsun Chang; Yueh-Min Huang; Wei-Sheng Wu (BMC Syst. Biol., 2014)

PCTFPeval: a web tool for benchmarking newly developed algorithms for predicting cooperative transcription factor pairs in yeast. - Fu-Jou Lai; Hong-Tsun Chang; Wei-Sheng Wu (BMC Bioinform., 2015)