Modelling overflow metabolism in Escherichia coli with flux balance analysis incorporating differential proteomic efficiencies of energy pathways. - Hong Zeng 003; Aidong Yang (BMC Syst. Biol., 2019)

Understanding and mathematical modelling of cellular resource allocation in microorganisms: a comparative synthesis. - Hong Zeng 003; Reza Rohani; Wei E. Huang; Aidong Yang (BMC Bioinform., 2021)

Flux balance analysis-based metabolic modeling of microbial secondary metabolism: Current status and outlook. - Sizhe Qiu; Aidong Yang; Hong Zeng 003 (PLoS Comput. Biol., 2023)