contamDE-lm: linear model-based differential gene expression analysis using next-generation RNA-seq data from contaminated tumor samples. - Yifan Ji; Chang Yu; Hong Zhang 037 (Bioinform., 2020)

A Retrospective Analysis using Deep-Learning Models for Prediction of Survival Outcome and Benefit of Adjuvant Chemotherapy in Stage II/III Colorectal Cancer. - Xingyu Li; Jitendra Jonnagaddala; Shuhua Yang; Hong Zhang 037; Xu Steven Xu (CoRR, 2021)

Improving Feature Extraction from Histopathological Images Through A Fine-tuning ImageNet Model. - Xingyu Li; Min Cen; Jinfeng Xu 001; Hong Zhang 037; Xu Steven Xu (CoRR, 2022)

Optimize Deep Learning Models for Prediction of Gene Mutations Using Unsupervised Clustering. - Zihan Chen 002; Xingyu Li; Miaomiao Yang; Hong Zhang 037; Xu Steven Xu (CoRR, 2022)

Predicting microsatellite instability and key biomarkers in colorectal cancer from H&E-stained images: Achieving SOTA with Less Data using Swin Transformer. - Bangwei Guo; Jitendra Jonnagaddala; Hong Zhang 037; Xu Steven Xu (CoRR, 2022)

A Novel Few-Shot Relation Extraction Pipeline Based on Adaptive Prototype Fusion. - Yuzhe Zhang; Min Cen; Tongzhou Wu; Hong Zhang 037 (CoRR, 2022)

Colorectal Cancer Survival Prediction Using Deep Distribution Based Multiple-Instance Learning. - Xingyu Li; Jitendra Jonnagaddala; Min Cen; Hong Zhang 037; Xu Steven 001 (Entropy, 2022)

Time to Embrace Natural Language Processing (NLP)-based Digital Pathology: Benchmarking NLP- and Convolutional Neural Network-based Deep Learning Pipelines. - Min Cen; Xingyu Li; Bangwei Guo; Jitendra Jonnagaddala; Hong Zhang 037; Xu Steven Xu (CoRR, 2023)

DPSeq: A Novel and Efficient Digital Pathology Classifier for Predicting Cancer Biomarkers using Sequencer Architecture. - Min Cen; Xingyu Li; Bangwei Guo; Jitendra Jonnagaddala; Hong Zhang 037; Xu Steven Xu (CoRR, 2023)

A robust and lightweight deep attention multiple instance learning algorithm for predicting genetic alterations. - Bangwei Guo; Xingyu Li; Miaomiao Yang; Hong Zhang 037; Xu Steven Xu (Comput. Medical Imaging Graph., 2023)

Conversational Dueling Bandits in Generalized Linear Models. - Shuhua Yang; Hui Yuan 002; Xiaoying Zhang; Mengdi Wang; Hong Zhang 037; Huazheng Wang (KDD, 2024)

SuperPromptSeg: A Novel Fine-Tuning-Free Segmentation Method Leveraging Superpixel-Based Point Prompts. - Ziqiao Zhou; Min Cen; Yuzhe Zhang; Hong Zhang 037; Xu Steven Xu (ICASSP, 2025)