ChIP-seq Data Plays an Important Role in a Cytosine-Based DNA Methylation Prediction Model. - Jie Lv 001; Yan Zhang 016; Yunfeng Qi; Hongbo Liu 004; Jiang Zhu; Jianzhong Su; Ruijie Zhang (FSKD (5), 2009)

Deducing Causal Relationships among Different Histone Modifications, DNA Methylation and Gene Expression. - Yunfeng Qi; Yan Zhang 016; Jie Lv 001; Hongbo Liu 004; Jiang Zhu; Jianzhong Su (ICNC (6), 2009)

Detecting novel hypermethylated genes in Breast cancer benefiting from feature selection. - Jie Lv 001; Jianzhong Su; Fang Wang; Yunfeng Qi; Hongbo Liu 004; Yan Zhang 016 (Comput. Biol. Medicine, 2010)

HHMD: the human histone modification database. - Yan Zhang 016; Jie Lv 001; Hongbo Liu 004; Jiang Zhu; Jianzhong Su; Qiong Wu; Yunfeng Qi; Fang Wang; Xia Li (Nucleic Acids Res., 2010)

Prioritizing cancer-related genes with aberrant methylation based on a weighted protein-protein interaction network. - Hui Liu; Jianzhong Su; Junhua Li; Hongbo Liu 004; Jie Lv 001; Boyan Li; Hong Qiao; Yan Zhang 016 (BMC Syst. Biol., 2011)

DiseaseMeth: a human disease methylation database. - Jie Lv 001; Hongbo Liu 004; Jianzhong Su; Xueting Wu; Hui Liu; Boyan Li; Xue Xiao; Fang Wang; Qiong Wu; Yan Zhang 016 (Nucleic Acids Res., 2012)

Identification of the differential DNA methylation markers among cancers. - Hongbo Liu 004; Zhe Li 004; Jing Ding; Jie Liu; Yan Zhang 016 (FSKD, 2013)

Long intergenic non-coding RNA detection benefited from integrative modeling of (Epi)genomic data. - Jie Lv 001; Hongbo Liu 004; Qiong Wu (FSKD, 2013)

Revealing the architecture of genetic and epigenetic regulation: a maximum likelihood model. - Fang Wang; Shaojun Zhang; Yanhua Wen; Yanjun Wei; Haidan Yan; Hongbo Liu 004; Jianzhong Su; Yan Zhang 016; Jianhua Che (Briefings Bioinform., 2014)

DevMouse, the mouse developmental methylome database and analysis tools. - Hongbo Liu 004; Rangfei Zhu; Jie Lv 001; Hongjuan He; Lin Yang; Zhijun Huang; Jianzhong Su; Yan Zhang 016; Shihuan Yu; Qiong Wu (Database J. Biol. Databases Curation, 2014)

Detection of type 2 diabetes related modules and genes based on epigenetic networks. - Hui Liu; Tongtong Wang; Hongbo Liu 004; Yanjun Wei; Guofeng Zhao 001; Jianzhong Su; Qiong Wu; Hong Qiao; Yan Zhang 016 (BMC Syst. Biol., 2014)

SEA: a super-enhancer archive. - Yanjun Wei; Shumei Zhang; Shipeng Shang; Bin Zhang; Song Li; Xinyu Wang; Fang Wang; Jianzhong Su; Qiong Wu; Hongbo Liu 004; Yan Zhang 016 (Nucleic Acids Res., 2016)

Cell subpopulation deconvolution reveals breast cancer heterogeneity based on DNA methylation signature. - Yanhua Wen; Yanjun Wei; Shumei Zhang; Song Li; Hongbo Liu 004; Fang Wang; Yue Zhao; Dongwei Zhang; Yan Zhang 016 (Briefings Bioinform., 2017)

DiseaseMeth version 2.0: a major expansion and update of the human disease methylation database. - Yichun Xiong; Yanjun Wei; Yue Gu; Shumei Zhang; Jie Lyu 002; Bin Zhang; Chuangeng Chen; Jiang Zhu; Yihan Wang; Hongbo Liu 004; Yan Zhang 016 (Nucleic Acids Res., 2017)