NOXclass: prediction of protein-protein interaction types. - Hongbo Zhu 001; Francisco S. Domingues; Ingolf Sommer; Thomas Lengauer (BMC Bioinform., 2006)

Structural Descriptors of Protein-Protein Binding Sites. - Oliver Sander; Francisco S. Domingues; Hongbo Zhu 001; Thomas Lengauer; Ingolf Sommer (APBC, 2008)

Characterization, classification and alignment of protein-protein interfaces. - Hongbo Zhu 001 (2010)

MSPocket: an orientation-independent algorithm for the detection of ligand binding pockets. - Hongbo Zhu 001; M. Teresa Pisabarro (Bioinform., 2011)

Reduced False Positives in PDZ Binding Prediction Using Sequence and Structural Descriptors. - John C. Hawkins; Hongbo Zhu 001; Joan Teyra; M. Teresa Pisabarro (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

The Thalidomide-Binding Domain of Cereblon Defines the CULT Domain Family and Is a New Member of the β-Tent Fold. - Andrei N. Lupas; Hongbo Zhu 001; Mateusz Korycinski (PLoS Comput. Biol., 2015)