mTCTScan: a comprehensive platform for annotation and prioritization of mutations affecting drug sensitivity in cancers. - Mulin Jun Li; Hongcheng Yao; Dandan Huang; Huanhuan Liu; Zipeng Liu; Hang Xu; Yiming Qin; Jeanette Prinz; Weiyi Xia; Panwen Wang; Bin Yan; Nhan L. Tran; et al. (Nucleic Acids Res., 2017)

Methods and resources to access mutation-dependent effects on cancer drug treatment. - Hongcheng Yao; Qian Liang; Xinyi Qian; Junwen Wang; Pak Chung Sham; Mulin Jun Li (Briefings Bioinform., 2020)

CAUSALdb: a database for disease/trait causal variants identified using summary statistics of genome-wide association studies. - Jianhua Wang; Dandan Huang; Yao Zhou; Hongcheng Yao; Huanhuan Liu; Sinan Zhai; Chengwei Wu; Zhanye Zheng; Ke Zhao; Zhao Wang; Xianfu Yi; Shijie Zhang; et al. (Nucleic Acids Res., 2020)

QTLbase: an integrative resource for quantitative trait loci across multiple human molecular phenotypes. - Zhanye Zheng; Dandan Huang; Jianhua Wang; Ke Zhao; Yao Zhou; Zhenyang Guo; Sinan Zhai; Hang Xu; Hui Cui; Hongcheng Yao; Zhao Wang; Xianfu Yi; et al. (Nucleic Acids Res., 2020)

vSampler: fast and annotation-based matched variant sampling tool. - Dandan Huang; Zhao Wang; Yao Zhou; Qian Liang; Pak Chung Sham; Hongcheng Yao; Mulin Jun Li (Bioinform., 2021)

VannoPortal: multiscale functional annotation of human genetic variants for interrogating molecular mechanism of traits and diseases. - Dandan Huang; Yao Zhou; Xianfu Yi; Xutong Fan; Jianhua Wang; Hongcheng Yao; Pak Chung Sham; Jihui Hao; Kexin Chen; Mulin Jun Li (Nucleic Acids Res., 2022)

Inferring CTCF-binding patterns and anchored loops across human tissues and cell types. - Hang Xu; Xianfu Yi; Xutong Fan; Chengyue Wu; Wei Wang; Xinlei Chu; Shijie Zhang; Xiaobao Dong; Zhao Wang; Jianhua Wang; Yao Zhou; Ke Zhao; et al. (Patterns, 2023)

Pheromone-guided parallel rough hypercuboid attribute reduction algorithm. - Weiping Ding 001; Hongcheng Yao; Hengrong Ju; Jiashuang Huang; Shu Jiang; Yuepeng Chen (Appl. Soft Comput., 2024)

Quality-aware fuzzy min-max neural networks for dynamic brain network analysis and its application to schizophrenia identification. - Tao Hou; Weiping Ding 001; Jiashuang Huang; Shu Jiang; Hongcheng Yao; Tianyi Zhou 001; Hengrong Ju (Appl. Soft Comput., 2025)

Evolutionary multistage multitasking method for feature selection in imbalanced data. - Weiping Ding 001; Hongcheng Yao; Jiashuang Huang; Tao Hou; Yu Geng (Swarm Evol. Comput., 2025)