Maximum Spectrum of Continuous Wavelet Transform and Its Application in Resolving an Overlapped Signal. - Xiaoquan Lu; Hongde Liu; Zhonghua Xue; Zhang Qiang (J. Chem. Inf. Model., 2004)

Support Vector Machine for Prediction of DNA-Binding Domains in Protein-DNA Complexes. - Jiansheng Wu; Hongtao Wu; Hongde Liu; Haoyan Zhou; Xiao Sun 006 (LSMS (2), 2007)

SVM-Based Approach for Predicting DNA-Binding Residues in Proteins from Amino Acid Sequences. - Xin Ma 003; Jiansheng Wu; Hongde Liu; Xinan Yang; Jianming Xie; Xiao Sun 006 (IJCBS, 2009)

Prediction of DNA-binding residues in proteins from amino acid sequences using a random forest model with a hybrid feature. - Jiansheng Wu; Hongde Liu; Xueye Duan; Yan Ding; Hongtao Wu; Yunfei Bai; Xiao Sun 006 (Bioinform., 2009)

Nucleosomes Are Well Positioned at Both Ends of Exons. - Hongde Liu; Xiao Sun 006 (LSMS/ICSEE, 2010)

Role of 10-11 bp periodicities of eukaryotic DNA sequence in nucleosome positioning. - Hongde Liu; Shuhai Lin; Zongwei Cai; Xiao Sun 006 (Biosyst., 2011)

Next-generation sequencing data processing: Analysis of unmapped reads and extremely high mapped peaks. - Jiao Chen; ZuoLei Dai; Chang-Chang Cao; Qianqian Zhang; Hongde Liu; Xiao Sun 006 (BMEI, 2012)

Nucleosome organization in sequences of alternative events in human genome. - Huan Huang; Shuangxin Yu; Hongde Liu; Xiao Sun 006 (Biosyst., 2012)

Sequence-Based Prediction of DNA-Binding Residues in Proteins with Conservation and Correlation Information. - Xin Ma 003; Jing Guo; Hongde Liu; Jianming Xie; Xiao Sun 006 (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

Histone modifications influence skipped exons inclusion. - Yue Hou; Huan Huang; Wenqiao Hu; Hongde Liu; Xiao Sun 006 (J. Bioinform. Comput. Biol., 2017)

Nucleosome Positioning of Intronless Genes in the Human Genome. - Xiangfei Cheng; Yue Hou; Yumin Nie; Yiru Zhang; Huan Huang; Hongde Liu; Xiao Sun 006 (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

DNMHMM: An approach to identify the differential nucleosome regions in multiple cell types based on a Hidden Markov Model. - Jiahao Xie; Yiran Cai; Huamei Li; Jiahui Wu; Xinlei Zhao; Kun Luo; Amit Sharma; Jianming Xie; Xiao Sun 006; Hongde Liu (Biosyst., 2019)

DeepSSV: detecting somatic small variants in paired tumor and normal sequencing data with convolutional neural network. - Jing Meng; Brandon Victor; Zhen He 002; Hongde Liu; Taijiao Jiang (Briefings Bioinform., 2021)

Predicting hormone receptors and PAM50 subtypes of breast cancer from multi-scale lesion images of DCE-MRI with transfer learning technique. - Wenlong Ming; Fuyu Li; Yanhui Zhu; Yunfei Bai; Wanjun Gu; Yun Liu 020; Xiao Sun 006; Xiaoan Liu; Hongde Liu (Comput. Biol. Medicine, 2022)

scAnno: a deconvolution strategy-based automatic cell type annotation tool for single-cell RNA-sequencing data sets. - Hongjia Liu; Huamei Li; Amit Sharma; Wenjuan Huang; Duo Pan; Yu Gu; Lu Lin; Xiao Sun 006; Hongde Liu (Briefings Bioinform., 2023)

FaiMA: Feature-aware In-context Learning for Multi-domain Aspect-based Sentiment Analysis. - Songhua Yang; Xinke Jiang; Hanjie Zhao; Wenxuan Zeng; Hongde Liu; Yuxiang Jia (LREC/COLING, 2024)

Emotion-Cause Pair Extraction Based on Dependency-injected Dual-MRC. - Changyong Niu; Chen Liu; Hongde Liu; Yuxiang Jia; Hongying Zan (IALP, 2024)

LaiDA: Linguistics-Aware In-Context Learning with Data Augmentation for Metaphor Components Identification. - Hongde Liu; Chenyuan He; Feiyang Meng; Changyong Niu; Yuxiang Jia (NLPCC (5), 2024)

Identifying Speakers and Addressees of Quotations in Novels with Prompt Learning. - Yuchen Yan; Hanjie Zhao; Senbin Zhu; Hongde Liu; Zhihong Zhang; Yuxiang Jia (NLPCC (4), 2024)

Does the Weather Still Affect Me When I Shop at Home? The Impact of Weather on Online Shopping Behavior. - Hongde Liu; Jun Wang; Ruilin Zhang; Ou Liu (J. Theor. Appl. Electron. Commer. Res., 2024)

An Empirical Study of the Quality Governance Level of China's Civil Aircraft Industry. - Tingyu Luo; Hongde Liu; Xiang Shi; Peng Meng; Jun Wang; Weiguo Fang (Syst., 2024)

DialogueMMT: Dialogue Scenes Understanding Enhanced Multi-modal Multi-task Tuning for Emotion Recognition in Conversations. - Chenyuan He; Senbin Zhu; Hongde Liu; Fei Gao; Yuxiang Jia; Hongying Zan; Min Peng (COLING, 2025)

GenWebNovel: A Genre-oriented Corpus of Entities in Chinese Web Novels. - Hanjie Zhao; Yuchen Yan; Senbin Zhu; Hongde Liu; Yuxiang Jia; Hongying Zan; Min Peng (COLING, 2025)

SILC-EFSA: Self-aware In-context Learning Correction for Entity-level Financial Sentiment Analysis. - Senbin Zhu; Chenyuan He; Hongde Liu; Pengcheng Dong; Hanjie Zhao; Yuchen Yan; Yuxiang Jia; Hongying Zan; Min Peng (COLING, 2025)

Dialogue-Based Multi-Dimensional Relationship Extraction from Novels. - Yuchen Yan; Hanjie Zhao; Senbin Zhu; Hongde Liu; Zhihong Zhang; Yuxiang Jia (CoRR, 2025)