TransPicker: a Transformer-based Framework for Particle Picking in cryoEM Micrographs. - Chi Zhang; Hongjia Li 001; Xiaohua Wan; Xuemei Chen; Zhenghe Yang; Jieqing Feng; Fa Zhang 001 (BIBM, 2021)

PickerOptimizer: A Deep Learning-Based Particle Optimizer for Cryo-Electron Microscopy Particle-Picking Algorithms. - Hongjia Li 001; Ge Chen; Shan Gao; Jintao Li 001; Fa Zhang 001 (ISBRA, 2021)

A Segmentation-aware Synergy Network for Single Particle Recognition in Cryo-EM. - Shuo Li; Hongjia Li 001; Chi Zhang; Fa Zhang 001; Xiaohua Wan (BIBM, 2022)

Noise-Transfer2Clean: denoising cryo-EM images based on noise modeling and transfer. - Hongjia Li 001; Hui Zhang; Xiaohua Wan; Zhidong Yang; Chengmin Li; Jintao Li 001; Renmin Han; Ping Zhu; Fa Zhang 001 (Bioinform., 2022)

A Transfer Learning-Based Classification Model for Particle Pruning in Cryo-Electron Microscopy. - Hongjia Li 001; Ge Chen; Shan Gao; Jintao Li 001; Xiaohua Wan; Fa Zhang 001 (J. Comput. Biol., 2022)

SaID: Simulation-Aware Image Denoising Pre-trained Model for Cryo-EM Micrographs. - Zhidong Yang; Hongjia Li 001; Dawei Zang; Renmin Han; Fa Zhang 001 (ISBRA, 2023)

A strategy combining denoising and cryo-EM single particle analysis. - Hui Zhang; Hongjia Li 001; Fa Zhang 001; Ping Zhu (Briefings Bioinform., 2023)

Improved Denoising of Cryo-Electron Microscopy Micrographs with Simulation-Aware Pretraining. - Zhidong Yang; Hongjia Li 001; Dawei Zang; Renmin Han; Fa Zhang 001 (J. Comput. Biol., 2024)

A Gaussian Filter-Based 3D Registration Method for Series Section Electron Microscopy. - Zhenbang Zhang; Hongjia Li 001; Zhiqiang Xu; Wenjia Meng; Renmin Han (AAAI, 2025)