Interactive exemplar-based segmentation toolkit for biomedical image analysis. - Xiang Li 001; Zhi Zhou; Philipp Keller; Hongkui Zeng; Tianming Liu 001; Hanchuan Peng (ISBI, 2015)

Adaptive Image Enhancement for Tracing 3D Morphologies of Neurons and Brain Vasculatures. - Zhi Zhou 006; Staci A. Sorensen; Hongkui Zeng; Michael Hawrylycz; Hanchuan Peng (Neuroinformatics, 2015)

A coupled autoencoder approach for multi-modal analysis of cell types. - Rohan Gala; Nathan W. Gouwens; Zizhen Yao; Agata Budzillo; Osnat Penn; Bosiljka Tasic; Gabe Murphy; Hongkui Zeng; Uygar Sümbül (NeurIPS, 2019)

Hierarchical organization of cortical and thalamic connectivity. - Julie A. Harris; Stefan Mihalas; Karla E. Hirokawa; Jennifer D. Whitesell; Hannah Choi; Amy Bernard; Phillip Bohn; Shiella Caldejon; Linzy Casal; Andrew Cho; Aaron Feiner; David Feng 001; et al. (Nat., 2019)

Fundamental bounds on the fidelity of sensory cortical coding. - Oleg I. Rumyantsev; Jérôme A. Lecoq; Oscar Hernandez; Yanping Zhang; Joan Savall; Radoslaw Chrapkiewicz; Jane Li; Hongkui Zeng; Surya Ganguli; Mark J. Schnitzer (Nat., 2020)

Consistent cross-modal identification of cortical neurons with coupled autoencoders. - Rohan Gala; Agata Budzillo; Fahimeh Baftizadeh; Jeremy A. Miller; Nathan W. Gouwens; Anton Arkhipov; Gabe Murphy; Bosiljka Tasic; Hongkui Zeng; Michael Hawrylycz; Uygar Sümbül (Nat. Comput. Sci., 2021)

Petabyte-Scale Multi-Morphometry of Single Neurons for Whole Brains. - Shengdian Jiang; Yimin Wang; Lijuan Liu; Liya Ding 001; Zongcai Ruan; Hong-Wei Dong; Giorgio A. Ascoli; Michael Hawrylycz; Hongkui Zeng; Hanchuan Peng (Neuroinformatics, 2022)