KCOSS: an ultra-fast k-mer counter for assembled genome analysis. - Deyou Tang; Yucheng Li; Daqiang Tan; Juan Fu; Yelei Tang; Jiabin Lin; Rong Zhao; Hongli Du; Zhongming Zhao (Bioinform., 2022)

A forecasting method for non-equal interval time series based on recurrent neural network. - Xin Liu 092; Hongli Du; Jian Yu (Neurocomputing, 2023)

Cyclic peptide membrane permeability prediction using deep learning model based on molecular attention transformer. - Dawei Jiang; Zixi Chen; Hongli Du (Frontiers Bioinform., 2025)

Comprehensive Drug-Likeness Prediction Using a Pretrained Transformer Model and Multitask Learning. - Yi Cai; Qian Zhang; Wenchong Tan; Jing Li; Dong Chen; Xiaoyun Lu; Hongli Du (J. Chem. Inf. Model., 2025)