Generalizing Nucleus Recognition Model in Multi-source Ki67 Immunohistochemistry Stained Images via Domain-Specific Pruning. - Jiatong Cai; Chenglu Zhu; Can Cui; Honglin Li 001; Tong Wu; Shichuan Zhang; Lin Yang 002 (MICCAI (8), 2021)

Generalizing Nucleus Recognition Model in Multi-source Images via Pruning. - Jiatong Cai; Chenglu Zhu; Can Cui; Honglin Li 001; Tong Wu; Shichuan Zhang; Lin Yang 002 (CoRR, 2021)

Category Separation For Weakly Supervised Multi-Class Cell Counting. - Jiatong Cai; Chenglu Zhu; Pingyi Chen; Shichuan Zhang; Honglin Li 001; Yuxuan Sun 002; Lin Yang 002 (ISBI, 2022)

Weakly Supervised Learning For Cell Recognition In Immunohistochemical Cytoplasm Staining Images. - Shichuan Zhang; Chenglu Zhu; Honglin Li 001; Jiatong Cai; Lin Yang 002 (ISBI, 2022)

Weakly Supervised Classification using Multi-Level Instance-Aware Optimization on Cervical Cytologic Image. - Chenglu Zhu; Yuxuan Sun 002; Honglin Li 001; Can Cui; Shichuan Zhang; Jiatong Cai; Yang Ling (ISBI, 2022)

Benchmarking the Robustness of Deep Neural Networks to Common Corruptions in Digital Pathology. - Yunlong Zhang; Yuxuan Sun 002; Honglin Li 001; Sunyi Zheng; Chenglu Zhu; Lin Yang 002 (MICCAI (2), 2022)

Multi-modal Learning with Missing Modality in Predicting Axillary Lymph Node Metastasis. - Shichuan Zhang; Sunyi Zheng; Zhongyi Shui; Honglin Li 001; Lin Yang 002 (BIBM, 2023)

Task-Specific Fine-Tuning via Variational Information Bottleneck for Weakly-Supervised Pathology Whole Slide Image Classification. - Honglin Li 001; Chenglu Zhu; Yunlong Zhang; Yuxuan Sun 002; Zhongyi Shui; Wenwei Kuang; Sunyi Zheng; Lin Yang 002 (CVPR, 2023)

Assessing the Robustness of Deep Learning-Assisted Pathological Image Analysis Under Practical Variables of Imaging System. - Yuxuan Sun 002; Chenglu Zhu; Yunlong Zhang; Honglin Li 001; Pingyi Chen; Lin Yang 002 (ICASSP, 2023)

Deformable Proposal-Aware P2PNet: A Universal Network for Cell Recognition under Point Supervision. - Zhongyi Shui; Sunyi Zheng; Xiaoxuan Yu; Shichuan Zhang; Honglin Li 001; Jingxiong Li; Lin Yang 002 (CoRR, 2023)

PathAsst: Redefining Pathology through Generative Foundation AI Assistant for Pathology. - Yuxuan Sun 002; Chenglu Zhu; Sunyi Zheng; Kai Zhang 033; Zhongyi Shui; Xiaoxuan Yu; Yizhi Zhao; Honglin Li 001; Yunlong Zhang; Ruojia Zhao; Xinheng Lyu; Lin Yang 002 (CoRR, 2023)

Semi-supervised Cell Recognition under Point Supervision. - Zhongyi Shui; Yizhi Zhao; Sunyi Zheng; Yunlong Zhang; Honglin Li 001; Shichuan Zhang; Xiaoxuan Yu; Chenglu Zhu; Lin Yang 002 (CoRR, 2023)

Attention-Challenging Multiple Instance Learning for Whole Slide Image Classification. - Yunlong Zhang; Honglin Li 001; Yuxuan Sun 002; Sunyi Zheng; Chenglu Zhu; Lin Yang 002 (CoRR, 2023)

Long-MIL: Scaling Long Contextual Multiple Instance Learning for Histopathology Whole Slide Image Analysis. - Honglin Li 001; Yunlong Zhang; Chenglu Zhu; Jiatong Cai; Sunyi Zheng; Lin Yang 002 (CoRR, 2023)

MI-Gen: Multiple Instance Generation of Pathology Reports for Gigapixel Whole-Slide Images. - Pingyi Chen; Honglin Li 001; Chenglu Zhu; Sunyi Zheng; Lin Yang 002 (CoRR, 2023)

DPA-P2PNet: Deformable Proposal-Aware P2PNet for Accurate Point-Based Cell Detection. - Zhongyi Shui; Sunyi Zheng; Chenglu Zhu; Shichuan Zhang; Xiaoxuan Yu; Honglin Li 001; Jingxiong Li; Pingyi Chen; Lin Yang 002 (AAAI, 2024)

PathAsst: A Generative Foundation AI Assistant towards Artificial General Intelligence of Pathology. - Yuxuan Sun 002; Chenglu Zhu; Sunyi Zheng; Kai Zhang 033; Lin Sun 006; Zhongyi Shui; Yunlong Zhang; Honglin Li 001; Lin Yang 002 (AAAI, 2024)

WSI-VQA: Interpreting Whole Slide Images by Generative Visual Question Answering. - Pingyi Chen; Chenglu Zhu; Sunyi Zheng; Honglin Li 001; Lin Yang 002 (ECCV (36), 2024)

Unleashing the Power of Prompt-Driven Nucleus Instance Segmentation. - Zhongyi Shui; Yunlong Zhang; Kai Yao; Chenglu Zhu; Sunyi Zheng; Jingxiong Li; Honglin Li 001; Yuxuan Sun 002; Ruizhe Guo; Lin Yang 002 (ECCV (27), 2024)

Attention-Challenging Multiple Instance Learning for Whole Slide Image Classification. - Yunlong Zhang; Honglin Li 001; Yunxuan Sun; Sunyi Zheng; Chenglu Zhu; Lin Yang 002 (ECCV (53), 2024)

Context-Aware Text-Assisted Multimodal Framework for Cervical Cytology Cell Diagnosis and Chatting. - Yuxuan Sun 002; Chenglu Zhu; Sunyi Zheng; Yunlong Zhang; Honglin Li 001; Lin Yang 002 (ICME, 2024)

WsiCaption: Multiple Instance Generation of Pathology Reports for Gigapixel Whole-Slide Images. - Pingyi Chen; Honglin Li 001; Chenglu Zhu; Sunyi Zheng; Zhongyi Shui; Lin Yang 002 (MICCAI (4), 2024)

PathUp: Patch-wise Timestep Tracking for Multi-class Large Pathology Image Synthesising Diffusion Model. - Jingxiong Li; Sunyi Zheng; Chenglu Zhu; Yuxuan Sun 002; Pingyi Chen; Zhongyi Shui; Yunlong Zhang; Honglin Li 001; Lin Yang 002 (ACM Multimedia, 2024)

Rethinking Transformer for Long Contextual Histopathology Whole Slide Image Analysis. - Honglin Li 001; Yunlong Zhang; Pingyi Chen; Zhongyi Shui; Chenglu Zhu; Lin Yang 002 (NeurIPS, 2024)

Benchmarking PathCLIP for Pathology Image Analysis. - Sunyi Zheng; Xiaonan Cui; Yuxuan Sun 002; Jingxiong Li; Honglin Li 001; Yunlong Zhang; Pingyi Chen; Xueping Jing; Zhaoxiang Ye; Lin Yang 002 (CoRR, 2024)

ADR: Attention Diversification Regularization for Mitigating Overfitting in Multiple Instance Learning based Whole Slide Image Classification. - Yunlong Zhang; Zhongyi Shui; Yunxuan Sun; Honglin Li 001; Jingxiong Li; Chenglu Zhu; Sunyi Zheng; Lin Yang 002 (CoRR, 2024)

Large-scale cervical precancerous screening via AI-assisted cytology whole slide image analysis. - Honglin Li 001; Yuxuan Sun 002; Chenglu Zhu; Yunlong Zhang; Shichuan Zhang; Zhongyi Shui; Pingyi Chen; Jingxiong Li; Sunyi Zheng; Can Cui; Lin Yang 002 (CoRR, 2024)

Panther: Illuminate the Sight of Multimodal LLMs with Instruction-Guided Visual Prompts. - Honglin Li 001; Yuting Gao; Chenglu Zhu; Jingdong Chen; Ming Yang 007; Lin Yang 002 (CoRR, 2024)

Gradient-aware learning for joint biases: Label noise and class imbalance. - Shichuan Zhang; Chenglu Zhu; Honglin Li 001; Jiatong Cai; Lin Yang 002 (Neural Networks, 2024)

Masked Conditional Variational Autoencoders for Chromosome Straightening. - Jingxiong Li; Sunyi Zheng; Zhongyi Shui; Shichuan Zhang; Linyi Yang; Yuxuan Sun 002; Yunlong Zhang; Honglin Li 001; Yuanxin Ye; Peter M. A. van Ooijen; Kang Li 004; Lin Yang 002 (IEEE Trans. Medical Imaging, 2024)

Stable Test-Time Training for Semantic Segmentation with Output Contrastive Loss. - Yunlong Zhang; Zhongyi Shui; Honglin Li 001; Yuxuan Sun 002; Chenglu Zhu; Lin Yang 002 (ICASSP, 2025)

Towards Effective and Efficient Context-aware Nucleus Detection in Histopathology Whole Slide Images. - Zhongyi Shui; Ruizhe Guo; Honglin Li 001; Yuxuan Sun 002; Yunlong Zhang; Chenglu Zhu; Jiatong Cai; Pingyi Chen; Yanzhou Su; Lin Yang 002 (CoRR, 2025)

PathVQ: Reforming Computational Pathology Foundation Model for Whole Slide Image Analysis via Vector Quantization. - Honglin Li 001; Zhongyi Shui; Yunlong Zhang; Chenglu Zhu; Lin Yang 002 (CoRR, 2025)