MS-Decipher: a user-friendly proteome database search software with an emphasis on deciphering the spectra of O-linked glycopeptides. - Jiawei Mao; He Zhu; Luyao Liu; Zheng Fang; Mingming Dong; Hongqiang Qin; Mingliang Ye (Bioinform., 2022)

GP-Plotter: Flexible Spectral Visualization for Proteomics Data with Emphasis on Glycoproteomics Analysis. - Zheng Fang; Mingming Dong; Hongqiang Qin; Mingliang Ye (Genom. Proteom. Bioinform., 2024)