An Algorithm for Constructing Orthogonal and Nearly-Orthogonal Arrays With Mixed Levels and Small Runs. - Hongquan Xu (Technometrics, 2002)

A system of high-dimensional, efficient, long-cycle and portable uniform random number generators. - Lih-Yuan Deng; Hongquan Xu (ACM Trans. Model. Comput. Simul., 2003)

Optimal Projective Three-Level Designs for Factor Screening and Interaction Detection. - Hongquan Xu; Shao-Wei Cheng; C. F. Jeff Wu (Technometrics, 2004)

Moment Aberration Projection for Nonregular Fractional Factorial Designs. - Hongquan Xu; Lih-Yuan Deng (Technometrics, 2005)

Design and Analysis of Experiments, Volume 2: Advanced Experimental Design. - Hongquan Xu (Technometrics, 2006)

Diagnostics for Linear Models With Functional Responses. - Qing Shen; Hongquan Xu (Technometrics, 2007)

Algorithmic Construction of Efficient Fractional Factorial Designs With Large Run Sizes. - Hongquan Xu (Technometrics, 2009)

Balancing Location and Dispersion Effects for Multiple Responses. - Hsiu-Wen Chen; Hongquan Xu; Weng Kee Wong (Qual. Reliab. Eng. Int., 2013)

Use of Fractional Factorial Designs in Antiviral Drug Studies. - Xianting Ding; Hongquan Xu; Chanelle Hopper; Jian Yang; Chih-Ming Ho (Qual. Reliab. Eng. Int., 2013)

Use of Orthogonal Array Composite Designs to Study Lipid Accumulation in a Cell-Free System. - Jessica Jaynes; Yitong Zhao; Hongquan Xu; Chih-Ming Ho (Qual. Reliab. Eng. Int., 2016)

Construction of Two-Level Nonregular Designs of Strength Three With Large Run Sizes. - Alan R. Vazquez; Hongquan Xu (Technometrics, 2019)

Cooperative Jamming Attack Strategy against Power Balance of Wireless Smart Grid Networks. - Hongquan Xu; Xueqi Jin; Qi Jin; Kai Luo; Wanbin Han (ICIT, 2021)

A mapping-based universal Kriging model for order-of-addition experiments in drug combination studies. - Qian Xiao 003; Hongquan Xu (Comput. Stat. Data Anal., 2021)

A Component-Position Model, Analysis and Design for Order-of-Addition Experiments. - Jian-Feng Yang; Fasheng Sun; Hongquan Xu (Technometrics, 2021)

A systematic review on the state-of-the-art strategies for protein representation. - Zi-Xuan Yue; Tian-Ci Yan; Hong-Quan Xu; Yu-Hong Liu; Yan-Feng Hong; Gong-Xing Chen; Tian Xie; Lin Tao (Comput. Biol. Medicine, 2023)

CovInter: interaction data between coronavirus RNAs and host proteins. - Kuerbannisha Amahong; Wei Zhang 218; Ying Zhou; Song Zhang; Jiayi Yin; Fengcheng Li; Hong-Quan Xu; Tian-Ci Yan; Zi-Xuan Yue; Yu-Hong Liu; Tingjun Hou; Yunqing Qiu; et al. (Nucleic Acids Res., 2023)

A systematic review of state-of-the-art strategies for machine learning-based protein function prediction. - Tian-Ci Yan; Zi-Xuan Yue; Hong-Quan Xu; Yu-Hong Liu; Yan-Feng Hong; Gong-Xing Chen; Lin Tao; Tian Xie (Comput. Biol. Medicine, 2023)

Systematic Description of the Content Variation of Natural Products (NPs): To Prompt the Yield of High-Value NPs and the Discovery of New Therapeutics. - Hong-Quan Xu; Wei Zhang 218; Ying Zhou; Zi-Xuan Yue; Tian-Ci Yan; Yuanyuan Zhang; Yu-Hong Liu; Yan-Feng Hong; Shuiping Liu; Feng Zhu 004; Lin Tao (J. Chem. Inf. Model., 2023)

EMNPD: a comprehensive endophytic microorganism natural products database for prompt the discovery of new bioactive substances. - Hong-Quan Xu; Huan Xiao; Jin-Hui Bu; Yan-Feng Hong; Yu-Hong Liu; Zi-Yue Tao; Shu-Fan Ding; Yi-Tong Xia; E Wu; Zhen Yan; Wei Zhang 218; Gong-Xing Chen; et al. (J. Cheminformatics, 2023)

Multimodal Representation Learning by Hybrid Transformer with Multi-level Fusion. - Yi Wu; Hongquan Xu; Jiaqing Zhang (ICBASE, 2024)

DDID: a comprehensive resource for visualization and analysis of diet-drug interactions. - Yan-Feng Hong; Hongquan Xu; Yuhong Liu; Sisi Zhu; Chao Tian; Gong-Xing Chen; Feng Zhu 004; Lin Tao (Briefings Bioinform., 2024)

Metaheuristic Solutions to Order-of-Addition Design Problems. - Zack Stokes; Weng Kee Wong; Hongquan Xu (J. Comput. Graph. Stat., 2024)

MOINER: A Novel Multiomics Early Integration Framework for Biomedical Classification and Biomarker Discovery. - Wei Zhang 218; Minjie Mou; Wei Hu; Mingkun Lu; Hanyu Zhang; Hongning Zhang; Yongchao Luo; Hongquan Xu; Lin Tao; Haibin Dai; Jianqing Gao; Feng Zhu 004 (J. Chem. Inf. Model., 2024)

VulPelican: An LLM and Interactive Static Analysis Tool Based Vulnerability Detection Framework. - Hongquan Xu; Hongyu Kuang; Feng Yang (ICIC (4), 2025)

ASVirus: A Comprehensive Knowledgebase for the Viral Alternative Splicing. - Yu-Hong Liu; Hong-Quan Xu; Si-Si Zhu; Yan-Feng Hong; Xiu-Wen Li; Hong-Xiu Li; Jun-Peng Xiong; Huan Xiao; Jin-Hui Bu; Feng Zhu 004; Lin Tao (J. Chem. Inf. Model., 2025)