IA64 Oriented OpenMP Compiler: Design and Implementation of Fortran Front End. - Hongshan Jiang; Suqin Zhang; Jinlan Tian (APPT, 2003)

Parallel Module Network Learning on Distributed Memory Multiprocessors. - Long Liu; Wei Hu 002; Chunrong Lai; Hongshan Jiang; Wenguang Chen; Weimin Zheng; Yimin Zhang 002 (ICPP Workshops, 2005)

Dynamic Bayesian Network (DBN) with Structure Expectation Maximization (SEM) for Modeling of Gene Network from Time Series Gene Expression Data. - Yu Zhang; Zhidong Deng; Hongshan Jiang; Peifa Jia (BIOCOMP, 2006)

Parallelization of module network structure learning and performance tuning on SMP. - Hongshan Jiang; Chunrong Lai; Wenguang Chen; Yurong Chen 001; Wei Hu 002; Weimin Zheng; Yimin Zhang 002 (IPDPS, 2006)

Gene Regulatory Network Construction Using Dynamic Bayesian Network (DBN) with Structure Expectation Maximization (SEM). - Yu Zhang; Zhidong Deng; Hongshan Jiang; Peifa Jia (RSKT, 2006)

Inferring Gene Regulatory Networks from Multiple Data Sources Via a Dynamic Bayesian Network with Structural EM. - Yu Zhang; Zhidong Deng; Hongshan Jiang; Peifa Jia (DILS, 2007)

Extracting Maximal Degenerate Motifs Based on a Suffix Tree. - Hongshan Jiang; Ying Zhao; Wenguang Chen; Weimin Zheng (BIOCOMP, 2009)

Improving cis-regulatory elements modeling by consensus scaffolded mixture models. - Hongshan Jiang; Ying Zhao; Wenguang Chen; Weimin Zheng; Xuegong Zhang (Sci. China Inf. Sci., 2013)

Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads. - Hongshan Jiang; Rong Lei; Shou-Wei Ding; Shuifang Zhu (BMC Bioinform., 2014)