PRAP: Pan Resistome analysis pipeline. - Yichen He; Xiujuan Zhou; Ziyan Chen; Xiangyu Deng; Andrew Gehring; Hongyu Ou; Lida Zhang; Xianming Shi (BMC Bioinform., 2020)

CS-Phylo: Accelerating Evolutionary Distance Estimation with Closed Syncmer-Enhanced MinHash. - Fajun Huang; Huan Liu; Hongyu Ou; Mengyuan Wang; Xuhui Zuo (ICIC (26), 2025)