Application Restructuring and Performance Portability on Shared Virtual Memory and Hardware-Coherent Multiprocessors. - Dongming Jiang; Hongzhang Shan; Jaswinder Pal Singh (PPoPP, 1997)

Parallel Tree Building on a Range of Shared Address Space Multiprocessors: Algorithms and Application Performance. - Hongzhang Shan; Jaswinder Pal Singh (IPPS/SPDP, 1998)

A comparison of MPI, SHMEM and cache-coherent shared address space programming models on the SGI Origin2000. - Hongzhang Shan; Jaswinder Pal Singh (International Conference on Supercomputing, 1999)

Parallel Sorting on Cache-coherent DSM Multiprocessors. - Hongzhang Shan; Jaswinder Pal Singh (SC, 1999)

Message Passing Vs. Shared Address Space on a Clusters of SMPs. - Hongzhang Shan; Jaswinder Pal Singh; Leonid Oliker; Rupak Biswas (IPDPS, 2001)

Design Strategies for Irregularly Adapting Parallel Applications. - Leonid Oliker; Rupak Biswas; Hongzhang Shan; Jaswinder Pal Singh (PP, 2001)

A Comparison of MPI, SHMEM and Cache-Coherent Shared Address Space Programming Models on a Tightly-Coupled Multiprocessors. - Hongzhang Shan; Jaswinder Pal Singh (Int. J. Parallel Program., 2001)

A Comparison of Three Programming Models for Adaptive Applications on the Origin2000. - Hongzhang Shan; Jaswinder Pal Singh; Leonid Oliker; Rupak Biswas (J. Parallel Distributed Comput., 2002)

Job Superscheduler Architecture and Performance in Computational Grid Environments. - Hongzhang Shan; Leonid Oliker; Rupak Biswas (SC, 2003)

Message passing and shared address space parallelism on an SMP cluster. - Hongzhang Shan; Jaswinder Pal Singh; Leonid Oliker; Rupak Biswas (Parallel Comput., 2003)

Performance characteristics of the Cray X1 and their implications for application performance tuning. - Hongzhang Shan; Erich Strohmaier (ICS, 2004)

Architecture Independent Performance Characterization and Benchmarking for Scientific Applications. - Erich Strohmaier; Hongzhang Shan (MASCOTS, 2004)

A Performance Evaluation of the Cray X1 for Scientific Applications. - Leonid Oliker; Rupak Biswas; Julian Borrill; Andrew Canning; Jonathan Carter 002; M. Jahed Djomehri; Hongzhang Shan; David Skinner (VECPAR, 2004)

Apex-Map: A Synthetic Scalable Benchmark Probe to Explore Data Access Performance on Highly Parallel Systems. - Erich Strohmaier; Hongzhang Shan (Euro-Par, 2005)

Apex-Map: A Global Data Access Benchmark to Analyze HPC Systems and Parallel Programming Paradigms. - Erich Strohmaier; Hongzhang Shan (SC, 2005)

Performance Analysis of a High Energy Colliding Beam Simulation Code on Four HPC Architectures. - Hongzhang Shan; Ji Qiang; Erich Strohmaier; Katherine A. Yelick (ICPP, 2006)

Particles and contiuum - Performance modeling and optimization of a high energy colliding beam simulation code. - Hongzhang Shan; Erich Strohmaier; Ji Qiang; David H. Bailey; Katherine A. Yelick (SC, 2006)

Scientific Application Performance on Candidate PetaScale Platforms. - Leonid Oliker; Andrew Canning; Jonathan Carter 002; Costin Iancu; Michael Lijewski; Shoaib Kamil 001; John Shalf; Hongzhang Shan; Erich Strohmaier; Stéphane Ethier; Tom Goodale (IPDPS, 2007)

Investigation of leading HPC I/O performance using a scientific-application derived benchmark. - Julian Borrill; Leonid Oliker; John Shalf; Hongzhang Shan (SC, 2007)

APEX-Map: a parameterized scalable memory access probe for high-performance computing systems. - Erich Strohmaier; Hongzhang Shan (Concurr. Comput. Pract. Exp., 2007)

Characterizing and predicting the I/O performance of HPC applications using a parameterized synthetic benchmark. - Hongzhang Shan; Katie Antypas; John Shalf (SC, 2008)

Linearly scaling 3D fragment method for large-scale electronic structure calculations. - Lin-Wang Wang; Byounghak Lee; Hongzhang Shan; Zhengji Zhao; Juan C. Meza; Erich Strohmaier; David H. Bailey (SC, 2008)

Performance Analysis of Leading HPC Architectures With Beambeam3D. - Hongzhang Shan; Erich Strohmaier; Ji Qiang (Int. J. High Perform. Comput. Appl., 2008)

HPC global file system performance analysis using a scientific-application derived benchmark. - Julian Borrill; Leonid Oliker; John Shalf; Hongzhang Shan; Andrew Uselton (Parallel Comput., 2009)

Developing a Parameterized Performance Proxy for Sequential Scientific Kernels. - Hongzhang Shan; Erich Strohmaier (HPCC, 2010)

A programming model performance study using the NAS parallel benchmarks. - Hongzhang Shan; Filip Blagojevic; Seung-Jai Min; Paul Hargrove; Haoqiang Jin; Karl Fürlinger; Alice Koniges; Nicholas J. Wright (Sci. Program., 2010)

Optimizing the Advanced Accelerator Simulation Framework Synergia Using OpenMP. - Hongzhang Shan; Erich Strohmaier; James F. Amundson; Eric G. Stern (IWOMP, 2012)

A preliminary evaluation of the hardware acceleration of the Cray Gemini interconnect for PGAS languages and comparison with MPI. - Hongzhang Shan; Nicholas J. Wright; John Shalf; Katherine A. Yelick; Marcus Wagner; Nathan Wichmann (SIGMETRICS Perform. Evaluation Rev., 2012)

Performance Tuning of Fock Matrix and Two-Electron Integral Calculations for NWChem on Leading HPC Platforms. - Hongzhang Shan; Brian Austin; Wibe de Jong; Leonid Oliker; Nicholas J. Wright; Edoardo Aprà (PMBS@SC, 2013)

UPC++: A PGAS Extension for C++. - Yili Zheng; Amir Kamil; Michael B. Driscoll; Hongzhang Shan; Katherine A. Yelick (IPDPS, 2014)

Evaluation of PGAS Communication Paradigms with Geometric Multigrid. - Hongzhang Shan; Amir Kamil; Samuel Williams 001; Yili Zheng; Katherine A. Yelick (PGAS, 2014)

Thread-level parallelization and optimization of NWChem for the Intel MIC architecture. - Hongzhang Shan; Samuel Williams 001; Wibe de Jong; Leonid Oliker (PMAM@PPoPP, 2015)

Parallel implementation and performance optimization of the configuration-interaction method. - Hongzhang Shan; Samuel Williams 001; Calvin W. Johnson; Kenneth S. McElvain; W. Erich Ormand (SC, 2015)

MPI usage at NERSC: Present and Future. - Alice Koniges; Brandon Cook 001; Jack Deslippe; Thorsten Kurth; Hongzhang Shan (EuroMPI, 2016)

Experiences of Applying One-Sided Communication to Nearest-Neighbor Communication. - Hongzhang Shan; Samuel Williams 001; Yili Zheng; Weiqun Zhang; Bei Wang 002; Stéphane Ethier; Zhengji Zhao (PAW@SC, 2016)

A Locality-Based Threading Algorithm for the Configuration-Interaction Method. - Hongzhang Shan; Samuel Williams 001; Calvin W. Johnson; Kenneth S. McElvain (IPDPS Workshops, 2017)

Performance analysis and optimization of the RAMPAGE metal alloy potential generation software. - Philip C. Roth; Hongzhang Shan; David Riegner; Nikolas Antolin; Sarat Sreepathi; Leonid Oliker; Samuel Williams 001; Shirley Moore; Wolfgang Windl (SEPS@SPLASH, 2017)

Improving MPI Reduction Performance for Manycore Architectures with OpenMP and Data Compression. - Hongzhang Shan; Samuel Williams 001; Calvin W. Johnson (PMBS@SC, 2018)

A Novel Multi-level Integrated Roofline Model Approach for Performance Characterization. - Tuomas Koskela; Zakhar Matveev; Charlene Yang; Adetokunbo Adedoyin; Roman Belenov; Philippe Thierry; Zhengji Zhao; Rahulkumar Gayatri; Hongzhang Shan; Leonid Oliker; Jack Deslippe; Ron Green; et al. (ISC, 2018)

Accelerating the Performance of Modal Aerosol Module of E3SM Using OpenACC. - Hongzhang Shan; Zhengji Zhao; Marcus Wagner (WACCPD@SC, 2019)