deBGA: read alignment with de Bruijn graph-based seed and extension. - Bo Liu 023; Hongzhe Guo; Michael Brudno; Yadong Wang 001 (Bioinform., 2016)

Fast variation-aware read alignment with deBGA-VARA. - Hongzhe Guo; Bo Liu 023; Dengfeng Guan; Yilei Fu; Yadong Wang 001 (BIBM, 2018)

Fast read alignment with incorporation of known genomic variants. - Hongzhe Guo; Bo Liu 023; Dengfeng Guan; Yilei Fu; Yadong Wang 001 (BMC Medical Informatics Decis. Mak., 2019)

Long-read sequencing settings for efficient structural variation detection based on comprehensive evaluation. - Tao Jiang 021; Shiqi Liu; Shuqi Cao; Yadong Liu; Zhe Cui; Yadong Wang 001; Hongzhe Guo (BMC Bioinform., 2021)

deGSM: Memory Scalable Construction Of Large Scale de Bruijn Graph. - Hongzhe Guo; Yilei Fu; Yan Gao 031; Junyi Li; Yadong Wang 001; Bo Liu 023 (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Evaluation of classification in single cell atac-seq data with machine learning methods. - Hongzhe Guo; Zhongbo Yang; Tao Jiang 021; Shiqi Liu; Yadong Wang 001; Zhe Cui (BMC Bioinform., 2022)

New quantum codes derived from images of cyclic codes. - Shixin Zhu; Hongzhe Guo; Xiaoshan Kai; Zhonghua Sun 001 (Quantum Inf. Process., 2022)

Comprehensive evaluation of RNA-seq alignment methods based on long-read sequencing data. - Yadong Liu; Hongzhe Guo; Zhenhao Lu; Yadong Wang 001; Zhongyu Liu; Tao Jiang 021 (BIBM, 2023)

Identifying cancer driver genes using a two-stage random walk with restart on a gene interaction network. - Ping Meng; Guohua Wang; Hongzhe Guo; Tao Jiang 021 (Comput. Biol. Medicine, 2023)

MLSpatial: A machine-learning method to reconstruct the spatial distribution of cells from scRNA-seq by extracting spatial features. - Mengbo Zhu; Changjun Li; Kebo Lv; Hongzhe Guo; Rui Hou 006; Geng Tian; Jialiang Yang (Comput. Biol. Medicine, 2023)

Reply: Correspondence on NanoVar's performance outlined by Jiang T. et al. in 'Long-read sequencing settings for efficient structural variation detection based on comprehensive evaluation'. - Tao Jiang 021; Shiqi Liu; Hongzhe Guo (BMC Bioinform., 2023)

miniSNV: accurate and fast single nucleotide variant calling from nanopore sequencing data. - Miao Cui; Yadong Liu; Xian Yu; Hongzhe Guo; Tao Jiang 021; Yadong Wang 001; Bo Liu 023 (Briefings Bioinform., 2024)

SCancerRNA: Expression at the Single-cell Level and Interaction Resource of Non-coding RNA Biomarkers for Cancers. - Hongzhe Guo; Liyuan Zhang; Xinran Cui; Liang Cheng 006; Tianyi Zhao; Yadong Wang 001 (Genom. Proteom. Bioinform., 2024)