A Duality-Based Method for Identifying Elemental Balance Violations in Metabolic Network Models. - Hooman Zabeti; Tamon Stephen; Bonnie Berger; Leonid Chindelevitch (WABI, 2018)

Improving MinHash via the containment index with applications to metagenomic analysis. - David Koslicki; Hooman Zabeti (Appl. Math. Comput., 2019)

MCS2: minimal coordinated supports for fast enumeration of minimal cut sets in metabolic networks. - Reza Miraskarshahi; Hooman Zabeti; Tamon Stephen; Leonid Chindelevitch (Bioinform., 2019)

An Interpretable Classification Method for Predicting Drug Resistance in M. Tuberculosis. - Hooman Zabeti; Nick C. Dexter; Amir Hosein Safari; Nafiseh Sedaghat; Maxwell W. Libbrecht; Leonid Chindelevitch (WABI, 2020)

Predicting drug resistance in M. tuberculosis using a long-term recurrent convolutional network. - Amir Hosein Safari; Nafiseh Sedaghat; Hooman Zabeti; Alpha Forna; Leonid Chindelevitch; Maxwell W. Libbrecht (BCB, 2021)

INGOT-DR: an interpretable classifier for predicting drug resistance in M. tuberculosis. - Hooman Zabeti; Nick C. Dexter; Amir Hosein Safari; Nafiseh Sedaghat; Maxwell W. Libbrecht; Leonid Chindelevitch (Algorithms Mol. Biol., 2021)