LabbookDB: A Wet-Work-Tracking Database Application Framework. - Horea-Ioan Ioanas; Bechara John Saab; Markus Rudin (SciPy, 2017)

COSplay: Contrast Optimized Stimulation Player. - Florian Aymanns; Markus Rudin; Horea-Ioan Ioanas (J. Open Source Softw., 2019)

An Automated Open-Source Workflow for Standards-Compliant Integration of Small Animal Magnetic Resonance Imaging Data. - Horea-Ioan Ioanas; Markus Marks; Clément M. Garin; Marc Dhenain; Mehmet Fatih Yanik; Markus Rudin (Frontiers Neuroinformatics, 2020)

DataLad: distributed system for joint management of code, data, and their relationship. - Yaroslav O. Halchenko; Kyle Meyer; Benjamin Poldrack; Debanjum Singh Solanky; Adina S. Wagner; Jason Gors; Dave MacFarlane; Dorian Pustina; Vanessa V. Sochat; Satrajit S. Ghosh; Christian Mönch; Christopher J. Markiewicz; et al. (J. Open Source Softw., 2021)

An optimized registration workflow and standard geometric space for small animal brain imaging. - Horea-Ioan Ioanas; Markus Marks; Valerio Zerbi; Mehmet Fatih Yanik; Markus Rudin (NeuroImage, 2021)

Neuroimaging article reexecution and reproduction assessment system. - Horea-Ioan Ioanas; Austin Macdonald; Yaroslav O. Halchenko (Frontiers Neuroinformatics, 2024)

HeuDiConv - flexible DICOM conversion into structured directory layouts. - Yaroslav O. Halchenko; Mathias Goncalves; Satrajit S. Ghosh; Pablo Velasco; Matteo Visconti di Oleggio Castello; Taylor Salo; John T. Wodder; Michael Hanke; Patrick S. Sadil; Krzysztof J. Gorgolewski; Horea-Ioan Ioanas; Chris Rorden; et al. (J. Open Source Softw., 2024)