Discovery and genotyping of novel sequence insertions in many sequenced individuals. - Pinar Kavak; Yen-Yi Lin; Ibrahim Numanagic; Hossein Asghari; Tunga Güngör; Can Alkan; Faraz Hach (Bioinform., 2017)

CircMiner: accurate and rapid detection of circular RNA through splice-aware pseudo-alignment scheme. - Hossein Asghari; Yen-Yi Lin; Yang Xu; Ehsan Haghshenas; Colin C. Collins; Faraz Hach (Bioinform., 2020)

Domain Generalization via Semi-supervised Meta Learning. - Hossein Sharifi-Noghabi; Hossein Asghari; Nazanin Mehrasa; Martin Ester (CoRR, 2020)