Classification of Epithelial Ovarian Carcinoma Whole-Slide Pathology Images Using Deep Transfer Learning. - Yiping Wang; David Farnell; Hossein Farahani; Mitchell Nursey; Basile Tessier-Cloutier; Steven J. M. Jones; David G. Huntsman; C. Blake Gilks; Ali Bashashati (CoRR, 2020)

CCRL: Contrastive Cell Representation Learning. - Ramin Nakhli; Amirali Darbandsari; Hossein Farahani; Ali Bashashati (ECCV Workshops (7), 2022)

Sparse Multi-Modal Graph Transformer with Shared-Context Processing for Representation Learning of Giga-pixel Images. - Ramin Nakhli; Puria Azadi Moghadam; Haoyang Mi; Hossein Farahani; Alexander Baras; C. Blake Gilks; Ali Bashashati (CVPR, 2023)

CO-PILOT: Dynamic Top-Down Point Cloud with Conditional Neighborhood Aggregation for Multi-Gigapixel Histopathology Image Representation. - Ramin Nakhli; Allen W. Zhang; Ali Khajegili Mirabadi; Katherine Rich; Maryam Asadi; C. Blake Gilks; Hossein Farahani; Ali Bashashati (ICCV, 2023)

ALL-IN: ALocal GLobal Graph-Based DIstillatioN Model for Representation Learning of Gigapixel Histopathology Images With Application In Cancer Risk Assessment. - Puria Azadi; Jonathan Suderman; Ramin Nakhli; Katherine Rich; Maryam Asadi; Sonia Kung; Htoo Oo; Mira Keyes; Hossein Farahani; Calum MacAulay; Larry Goldenberg; Peter Black; et al. (MICCAI (6), 2023)

A Morphology Focused Diffusion Probabilistic Model for Synthesis of Histopathology Images. - Puria Azadi Moghadam; Sanne Van Dalen; Karina C. Martin; Jochen K. Lennerz; Stephen Yip; Hossein Farahani; Ali Bashashati (WACV, 2023)

AMIGO: Sparse Multi-Modal Graph Transformer with Shared-Context Processing for Representation Learning of Giga-pixel Images. - Ramin Nakhli; Puria Azadi Moghadam; Haoyang Mi; Hossein Farahani; Alexander Baras; C. Blake Gilks; Ali Bashashati (CoRR, 2023)

VOLTA: an Environment-Aware Contrastive Cell Representation Learning for Histopathology. - Ramin Nakhli; Allen Zhang 002; Hossein Farahani; Amirali Darbandsari; Elahe Shenasa; Sidney Thiessen; Katy Milne; Jessica McAlpine; Brad Nelson; C. Blake Gilks; Ali Bashashati (CoRR, 2023)

GRASP: GRAph-Structured Pyramidal Whole Slide Image Representation. - Ali Khajegili Mirabadi; Graham Archibald; Amirali Darbandsari; Alberto Contreras-Sanz; Ramin Ebrahim Nakhli; Maryam Asadi; Allen Zhang 002; C. Blake Gilks; Peter Black; Gang Wang; Hossein Farahani; Ali Bashashati (CoRR, 2024)

Benchmarking Histopathology Foundation Models for Ovarian Cancer Bevacizumab Treatment Response Prediction from Whole Slide Images. - Mayur Mallya; Ali Khajegili Mirabadi; Hossein Farahani; Ali Bashashati (CoRR, 2024)

Boltzmann Semantic Score: A Semantic Metric for Evaluating Large Vision Models Using Large Language Models. - Ali Khajegili Mirabadi; Katherine Rich; Hossein Farahani; Ali Bashashati (ICLR, 2025)