A correlation study of quinoline derivatives and their pharmaceutical behavior by ab initio calculated NQR parameters. - Marjan A. Rafiee; Nasser L. Hadipour; Hossein Naderi-manesh (J. Comput. Aided Mol. Des., 2004)

The Role of Charge Distribution on the Antimalarial Activity of Artemisinin Analogues. - Marjan A. Rafiee; Nasser L. Hadipour; Hossein Naderi-manesh (J. Chem. Inf. Model., 2005)

Binding site locations and interaction of the isolated middle loop of snake neurotoxin I with muscle type nicotinic acetylcholine receptor: molecular dynamics and docking simulation study. - Adak Nasiripourdori; Bijan Ranjbar; Hossein Naderi-manesh (BMC Syst. Biol., 2007)

Molecular dynamics simulations studies of aurein 1.2 analogs in water and TFE/water. - Safiyeh Soofian; Hossein Naderi-manesh (BMC Syst. Biol., 2007)

Computational simulations of interactions of the κ-hefutoxin1 with the voltage-gated potassium ion channels. - Mahbobeh Zarrabi; Hossein Naderi-manesh (BMC Syst. Biol., 2007)

PDB2Graph: A toolbox for identifying critical amino acids map in proteins based on graph theory. - Niloofar Niknam; Hamed Khakzad; Seyed Shahriar Arab; Hossein Naderi-manesh (Comput. Biol. Medicine, 2016)

Application of ANN and RSM techniques for modeling electrospinning process of polycaprolactone. - Tahere Khatti; Hossein Naderi-manesh; Seyed Mehdi Kalantar (Neural Comput. Appl., 2019)

The role of Wnt palmitoleylated loop conserved disulfide bonds in Wnt-frizzled complex structural dynamics: Insights from molecular dynamics simulations. - N. Dehghanbanadaki; H. Mehralitabar; R. Sotoudeh; Hossein Naderi-manesh (Comput. Biol. Medicine, 2023)

A multi-stage weakly supervised design for spheroid segmentation to explore mesenchymal stem cell differentiation dynamics. - Arash Shahbazpoor Shahbazi; Farzin Irandoost; Reza Mahdavian; Seyedehsamaneh Shojaeilangari; Abdollah Allahvardi; Hossein Naderi-manesh (BMC Bioinform., 2025)