Rat Genome Database (RGD): mapping disease onto the genome. - Simon N. Twigger; Jian Lu; Mary Shimoyama; Dan Chen; Dean Pasko; Hanping Long; Jessica Ginster; Chin-Fu Chen; Rajni Nigam; Anne E. Kwitek; Janan T. Eppig; Lois Maltais; et al. (Nucleic Acids Res., 2002)

The Rat Genome Database (RGD): developments towards a phenome database. - Norberto de la Cruz; Susan Bromberg; Dean Pasko; Mary Shimoyama; Simon N. Twigger; Jiali Chen; Chin-Fu Chen; Chunyu Fan; Cindy Foote; Gopal R. Gopinath; Glenn Harris; Aubrey Hughes; et al. (Nucleic Acids Res., 2005)

Comprehensive quality control utilizing the prehybridization third-dye image leads to accurate gene expression measurements by cDNA microarrays. - Xujing Wang; Shuang Jia; Lisa Meyer; Bixia Xiang; Li-Yen Chen; Nan Jiang; Carol Moreno; Howard J. Jacob; Soumitra Ghosh; Martin J. Hessner (BMC Bioinform., 2006)

The Rat Genome Database, update 2007 - Easing the path from disease to data and back again. - Simon N. Twigger; Mary Shimoyama; Susan Bromberg; Anne E. Kwitek; Howard J. Jacob (Nucleic Acids Res., 2007)

The Rat Genome Database 2009: variation, ontologies and pathways. - Melinda R. Dwinell; Elizabeth A. Worthey; Mary Shimoyama; Burcu Bakir-Gungor; Jeffrey DePons; Stanley J. F. Laulederkind; Timothy Lowry; Rajni Nigam; Victoria Petri; Jennifer R. Smith; Alexander Stoddard; Simon N. Twigger; et al. (Nucleic Acids Res., 2009)

The Rat Genome Database Curators: Who, What, Where, Why. - Mary Shimoyama; G. Thomas Hayman; Stanley J. F. Laulederkind; Rajni Nigam; Timothy Lowry; Victoria Petri; Jennifer R. Smith; Shur-Jen Wang; Diane H. Munzenmaier; Melinda R. Dwinell; Simon N. Twigger; Howard J. Jacob (PLoS Comput. Biol., 2009)

The Rat Genome Database curation tool suite: a set of optimized software tools enabling efficient acquisition, organization, and presentation of biological data. - Stanley J. F. Laulederkind; Mary Shimoyama; G. Thomas Hayman; Timothy Lowry; Rajni Nigam; Victoria Petri; Jennifer R. Smith; Shur-Jen Wang; Jeff de Pons; George Kowalski; Weisong Liu; Wes Rood; et al. (Database J. Biol. Databases Curation, 2011)

The Rat Genome Database Pathway Portal. - Victoria Petri; Mary Shimoyama; G. Thomas Hayman; Jennifer R. Smith; Marek Tutaj; Jeff de Pons; Melinda R. Dwinell; Diane H. Munzenmaier; Simon N. Twigger; Howard J. Jacob (Database J. Biol. Databases Curation, 2011)

Ontology searching and browsing at the Rat Genome Database. - Stanley J. F. Laulederkind; Marek Tutaj; Mary Shimoyama; G. Thomas Hayman; Timothy Lowry; Rajni Nigam; Victoria Petri; Jennifer R. Smith; Shur-Jen Wang; Jeff de Pons; Melinda R. Dwinell; Howard J. Jacob (Database J. Biol. Databases Curation, 2012)

The Rat Genome Database 2013 - data, tools and users. - Stanley J. F. Laulederkind; G. Thomas Hayman; Shur-Jen Wang; Jennifer R. Smith; Timothy Lowry; Rajni Nigam; Victoria Petri; Jeff de Pons; Melinda R. Dwinell; Mary Shimoyama; Diane H. Munzenmaier; Elizabeth A. Worthey; et al. (Briefings Bioinform., 2013)

Analysis of disease-associated objects at the Rat Genome Database. - Shur-Jen Wang; Stanley J. F. Laulederkind; G. Thomas Hayman; Jennifer R. Smith; Victoria Petri; Timothy Lowry; Rajni Nigam; Melinda R. Dwinell; Elizabeth A. Worthey; Diane H. Munzenmaier; Mary Shimoyama; Howard J. Jacob (Database J. Biol. Databases Curation, 2013)

Rat Strain Ontology: structured controlled vocabulary designed to facilitate access to strain data at RGD. - Rajni Nigam; Diane H. Munzenmaier; Elizabeth A. Worthey; Melinda R. Dwinell; Mary Shimoyama; Howard J. Jacob (J. Biomed. Semant., 2013)

The pathway ontology - updates and applications. - Victoria Petri; Pushkala Jayaraman; Marek Tutaj; G. Thomas Hayman; Jennifer R. Smith; Jeff de Pons; Stanley J. F. Laulederkind; Timothy Lowry; Rajni Nigam; Shur-Jen Wang; Mary Shimoyama; Melinda R. Dwinell; et al. (J. Biomed. Semant., 2014)

Improved rat genome gene prediction by integration of ESTs with RNA-Seq information. - Liping Li; Enguo Chen; Chun Yang; Jun Zhu; Pushkala Jayaraman; Jeff de Pons; Catherine C. Kaczorowski; Howard J. Jacob; Andrew S. Greene; Matthew R. Hodges; Allen W. Cowley Jr.; Mingyu Liang; et al. (Bioinform., 2015)

The Rat Genome Database 2015: genomic, phenotypic and environmental variations and disease. - Mary Shimoyama; Jeff de Pons; G. Thomas Hayman; Stanley J. F. Laulederkind; Weisong Liu; Rajni Nigam; Victoria Petri; Jennifer R. Smith; Marek Tutaj; Shur-Jen Wang; Elizabeth A. Worthey; Melinda R. Dwinell; et al. (Nucleic Acids Res., 2015)