An Optimal Algorithm for Querying Tree Structures and its Applications in Bioinformatics. - Hsiao-Fei Liu; Ya-Hui Chang; Kun-Mao Chao (SIGMOD Rec., 2004)

Algorithms for Computing the Length-Constrained Max-Score Segments with Applications to DNA Copy Number Data Analysis. - Hsiao-Fei Liu; Peng-An Chen; Kun-Mao Chao (ISAAC, 2007)

A tight analysis of the Katriel-Bodlaender algorithm for online topological ordering. - Hsiao-Fei Liu; Kun-Mao Chao (Theor. Comput. Sci., 2007)

CNVDetector: locating copy number variations using array CGH data. - Peng-An Chen; Hsiao-Fei Liu; Kun-Mao Chao (Bioinform., 2008)

An Õ(n2.5)-Time Algorithm for Online Topological Ordering - Hsiao-Fei Liu; Kun-Mao Chao (CoRR, 2008)

Algorithms for Locating Constrained Optimal Intervals - Hsiao-Fei Liu; Peng-An Chen; Kun-Mao Chao (CoRR, 2008)

Algorithms for finding the weight-constrained k longest paths in a tree and the length-constrained k maximum-sum segments of a sequence. - Hsiao-Fei Liu; Kun-Mao Chao (Theor. Comput. Sci., 2008)

On Locating Disjoint Segments with Maximum Sum of Densities. - Hsiao-Fei Liu; Kun-Mao Chao (Algorithmica, 2009)

Optimal algorithms for the average-constrained maximum-sum segment problem. - Chih-Huai Cheng; Hsiao-Fei Liu; Kun-Mao Chao (Inf. Process. Lett., 2009)

Minkowski Sum Selection and Finding. - Cheng-Wei Luo; Hsiao-Fei Liu; Peng-An Chen; Kun-Mao Chao (Int. J. Comput. Geom. Appl., 2011)

Linear-Time Algorithms for the Multiple Gene Duplication Problems. - Cheng-Wei Luo; Ming-Chiang Chen; Yi-Ching Chen; Roger W. L. Yang; Hsiao-Fei Liu; Kun-Mao Chao (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Fast Quasi-biclique Mining with Giraph. - Hsiao-Fei Liu; Chung-Tsai Su; An-Chiang Chu (BigData Congress, 2013)