A heuristic approach for detecting RNA H-type pseudoknots. - Chun-Hsiang Huang; Chin Lung Lu; Hsien-Tai Chiu (Bioinform., 2005)

Analysis of circular genome rearrangement by fusions, fissions and block-interchanges. - Chin Lung Lu; Yen-Lin Huang; Tsui Ching Wang; Hsien-Tai Chiu (BMC Bioinform., 2006)

Reconstructing genome trees of prokaryotes using overlapping genes. - Chih-Hsien Cheng; Chung-Han Yang; Hsien-Tai Chiu; Chin Lung Lu (BMC Bioinform., 2010)

R3D-BLAST: a search tool for similar RNA 3D substructures. - Yun-Chen Liu; Chung-Han Yang; Kun-Tze Chen; Jyun-Rong Wang; Mei-Ling Cheng; Jen-Chun Chung; Hsien-Tai Chiu; Chin Lung Lu (Nucleic Acids Res., 2011)

CAR: contig assembly of prokaryotic draft genomes using rearrangements. - Chin Lung Lu; Kun-Tze Chen; Shih-Yuan Huang; Hsien-Tai Chiu (BMC Bioinform., 2014)

An efficient algorithm for one-sided block ordering problem under block-interchange distance. - Kun-Tze Chen; Chi-Long Li; Hsien-Tai Chiu; Chin Lung Lu (Theor. Comput. Sci., 2016)

CSAR: a contig scaffolding tool using algebraic rearrangements. - Kun-Tze Chen; Chia-Liang Liu; Shang-Hao Huang; Hsin-Ting Shen; Yi-Kung Shieh; Hsien-Tai Chiu; Chin Lung Lu (Bioinform., 2018)