PDA: Pooled DNA analyzer. - Hsin-Chou Yang; Chia-Ching Pan; Chin-Yu Lin; Cathy S. J. Fann (BMC Bioinform., 2006)

PoooL: an efficient method for estimating haplotype frequencies from large DNA pools. - Han Zhang 003; Hsin-Chou Yang; Yaning Yang (Bioinform., 2008)

Using the longest significance run to estimate region-specific p-values in genetic association mapping studies. - Ie-Bin Lian; Yi-Hsien Lin; Ying-Chao Lin; Hsin-Chou Yang; Chee-Jang Chang; Cathy S. J. Fann (BMC Bioinform., 2008)

MPDA: Microarray pooled DNA analyzer. - Hsin-Chou Yang; Mei-Chu Huang; Ling-Hui Li; Chien-Hsing Lin; Alice L. T. Yu; Mitchell B. Diccianni; Jer-Yuarn Wu; Yuan-Tsong Chen; Cathy S. J. Fann (BMC Bioinform., 2008)

SAQC: SNP array quality control. - Hsin-Chou Yang; Hsin-Chi Lin; Meijyh Kang; Chun-Houh Chen; Chien-Wei Lin; Ling-Hui Li; Jer-Yuarn Wu; Yuan-Tsong Chen; Wen-Harn Pan (BMC Bioinform., 2011)

OPATs: Omnibus P-value association tests. - Chia-Wei Chen; Hsin-Chou Yang (Briefings Bioinform., 2019)

Generalized Estimating Equations Boosting (GEEB) machine for correlated data. - Yuan-Wey Wang; Hsin-Chou Yang; Yi-Hau Chen; Chao-Yu Guo (J. Big Data, 2024)