A self-organizing principle for learning nonlinear manifolds. - Dimitris K. Agrafiotis; Huafeng Xu (Proc. Natl. Acad. Sci. USA, 2002)

A Geodesic Framework for Analyzing Molecular Similarities. - Dimitris K. Agrafiotis; Huafeng Xu (J. Chem. Inf. Comput. Sci., 2003)

Nearest Neighbor Search in General Metric Spaces Using a Tree Data Structure with a Simple Heuristic. - Huafeng Xu; Dimitris K. Agrafiotis (J. Chem. Inf. Comput. Sci., 2003)

Conformational Sampling by Self-Organization. - Huafeng Xu; Sergei Izrailev; Dimitris K. Agrafiotis (J. Chem. Inf. Comput. Sci., 2003)

Molecular dynamics - Scalable algorithms for molecular dynamics simulations on commodity clusters. - Kevin J. Bowers; Edmond Chow; Huafeng Xu; Ron O. Dror; Michael P. Eastwood; Brent A. Gregersen; John L. Klepeis; István Kolossváry; Mark A. Moraes; Federico D. Sacerdoti; John K. Salmon; Yibing Shan; et al. (SC, 2006)

The Induced Matching Extendability of C2n(1, k). - Huafeng Xu; Xianhui Bo (Ars Comb., 2010)

Solution of Grey Chance Constrained Programming and Convexity of its Feasible Set. - Huafeng Xu; Yongli Bai; Zhigeng Fang (J. Networks, 2013)

Global output-feedback finite-time stabilization for a class of stochastic nonlinear cascaded systems. - Qixun Lan; Huawei Niu; Yamei Liu; Huafeng Xu (Kybernetika, 2017)

Optimal Measurement Network of Pairwise Differences. - Huafeng Xu (J. Chem. Inf. Model., 2019)

Alchemical Binding Free Energy Calculations in AMBER20: Advances and Best Practices for Drug Discovery. - Tai-Sung Lee; Bryce K. Allen; Timothy J. Giese; Zhenyu Guo; Pengfei Li 003; Charles Lin; T. Dwight McGee Jr.; David A. Pearlman; Brian K. Radak; Yujun Tao; Hsu-Chun Tsai; Huafeng Xu; et al. (J. Chem. Inf. Model., 2020)

Hierarchical Deep Reinforcement Learning for Multi-robot Cooperation in Partially Observable Environment. - Zhixuan Liang; Jiannong Cao 001; Wanyu Lin; Jinlin Chen; Huafeng Xu (CogMI, 2021)

Hierarchical Reinforcement Learning with Opponent Modeling for Distributed Multi-agent Cooperation. - Zhixuan Liang; Jiannong Cao 001; Shan Jiang 005; Divya Saxena; Huafeng Xu (ICDCS, 2022)

From Multi-agent to Multi-robot: A Scalable Training and Evaluation Platform for Multi-robot Reinforcement Learning. - Zhixuan Liang; Jiannong Cao 001; Shan Jiang 005; Divya Saxena; Jinlin Chen; Huafeng Xu (CoRR, 2022)

Multi-Vib: Precise Multi-point Vibration Monitoring Using mmWave Radar. - Yanni Yang; Huafeng Xu; Qianyi Chen; Jiannong Cao 001; Yanwen Wang 001 (Proc. ACM Interact. Mob. Wearable Ubiquitous Technol., 2022)

Design and Development of a Deformable In-Pipe Inspection Robot for Various Diameter Pipes. - Huafeng Xu; Jiannong Cao 001; Zhiqin Cheng; Zhixuan Liang; Jinlin Chen (IROS, 2023)

The slow but steady rise of binding free energy calculations in drug discovery. - Huafeng Xu (J. Comput. Aided Mol. Des., 2023)

From Agents to Robots: A Training and Evaluation Platform for Multi-robot Reinforcement Learning. - Zhixuan Liang; Jiannong Cao 001; Shan Jiang 005; Divya Saxena; Rui Cao; Huafeng Xu (ICPADS, 2024)

Performance and Analysis of the Alchemical Transfer Method for Binding-Free-Energy Predictions of Diverse Ligands. - Lieyang Chen; Yujie Wu; Chuanjie Wu; Ana Silveira; Woody Sherman; Huafeng Xu; Emilio Gallicchio (J. Chem. Inf. Model., 2024)