Measures for the degree of overlap of gene signatures and applications to TCGA. - Xingjie Shi; Huangdi Yi; Shuangge Ma (Briefings Bioinform., 2015)

Vertical integration methods for gene expression data analysis. - Mengyun Wu; Huangdi Yi; Shuangge Ma (Briefings Bioinform., 2021)

Aligned deep neural network for integrative analysis with high-dimensional input. - Shunqin Zhang; Sanguo Zhang; Huangdi Yi; Shuangge Ma (J. Biomed. Informatics, 2023)