HSYMDOCK: a docking web server for predicting the structure of protein homo-oligomers with Cn or Dn symmetry. - Yumeng Yan; Huanyu Tao; Sheng-You Huang (Nucleic Acids Res., 2018)

Protein-ensemble-RNA docking by efficient consideration of protein flexibility through homology models. - Jiahua He; Huanyu Tao; Sheng-You Huang (Bioinform., 2019)

PepBDB: a comprehensive structural database of biological peptide-protein interactions. - Zeyu Wen; Jiahua He; Huanyu Tao; Sheng-You Huang (Bioinform., 2019)

HNADOCK: a nucleic acid docking server for modeling RNA/DNA-RNA/DNA 3D complex structures. - Jiahua He; Jun Wang; Huanyu Tao; Yi Xiao; Sheng-You Huang (Nucleic Acids Res., 2019)

Improving Protein-Peptide Docking Results via Pose-Clustering and Rescoring with a Combined Knowledge-Based and MM-GBSA Scoring Function. - Huanyu Tao; Yanjun Zhang; Sheng-You Huang (J. Chem. Inf. Model., 2020)

Docking cyclic peptides formed by a disulfide bond through a hierarchical strategy. - Huanyu Tao; Xuejun Zhao; Keqiong Zhang; Peicong Lin; Sheng-You Huang (Bioinform., 2022)

Efficient 3D conformer generation of cyclic peptides formed by a disulfide bond. - Huanyu Tao; Qilong Wu 001; Xuejun Zhao; Peicong Lin; Sheng-You Huang (J. Cheminformatics, 2022)

Protein-protein contact prediction by geometric triangle-aware protein language models. - Peicong Lin; Huanyu Tao; Hao Li; Sheng-You Huang (Nat. Mac. Intell., 2023)