Algorithms for locating extremely conserved elements in multiple sequence alignments. - Huei-Hun Elizabeth Tseng; Martin Tompa (BMC Bioinform., 2009)

Finding Non-Coding RNAs through genome-Scale Clustering. - Huei-Hun Elizabeth Tseng; Zasha Weinberg; Jeremy Gore; Ronald R. Breaker; Walter L. Ruzzo (J. Bioinform. Comput. Biol., 2009)

Discovery and Applications of Bacterial Noncoding RNAs. - Huei-Hun Elizabeth Tseng (2012)