Pani: a novel algorithm for fast discovery of putative target nodes in signaling networks. - Huey-Eng Chua; Qing Zhao; Sourav S. Bhowmick; C. Forbes Dewey Jr.; Lisa Tucker-Kellogg; Hanry Yu (BCB, 2011)

STEROID: in silico heuristic target combination identification for disease-related signaling networks. - Huey-Eng Chua; Sourav S. Bhowmick; Lisa Tucker-Kellogg; C. Forbes Dewey Jr. (BCB, 2012)

PANI: an interactive data-driven tool for target prioritization in signaling networks. - Huey-Eng Chua; Sourav S. Bhowmick; Lisa Tucker-Kellogg; Yingqi Wang; C. Forbes Dewey Jr.; Hanry Yu (IHI, 2012)

In silico identification of endo16 regulators in the sea urchin endomesoderm gene regulatory network. - Huey-Eng Chua; Sourav S. Bhowmick; Lisa Tucker-Kellogg; Qing Zhao; C. Forbes Dewey Jr.; Hanry Yu (IHI, 2012)

One feature doesn't fit all: characterizing topological features of targets in signaling networks. - Huey-Eng Chua; Sourav S. Bhowmick; Lisa Tucker-Kellogg (BCB, 2014)

INGOT: Towards network-driven in silico combination therapy. - Sourav S. Bhowmick; Huey-Eng Chua; Jie Zheng 002 (BigComp, 2014)

ViSual: An HCI-inspired simulator for blending visual subgraph query construction and processing. - Sourav S. Bhowmick; Huey-Eng Chua; Benji Thian; Byron Choi (ICDE, 2015)

TENET: topological feature-based target characterization in signalling networks. - Huey-Eng Chua; Sourav S. Bhowmick; Lisa Tucker-Kellogg; C. Forbes Dewey Jr. (Bioinform., 2015)

Computational cell fate modelling for discovery of rewiring in apoptotic network for enhanced cancer drug sensitivity. - Shital K. Mishra; Sourav S. Bhowmick; Huey-Eng Chua; Fan Zhang 089; Jie Zheng 002 (BMC Syst. Biol., 2015)

Trecento: in silico network-driven identification of target combinations for combination therapy - Huey-Eng Chua (2015)

TAPESTRY: Network-centric Target Prioritization in Disease-related Signaling Networks. - Huey-Eng Chua; Sourav S. Bhowmick; Jie Zheng 002; Lisa Tucker-Kellogg (BCB, 2016)

Predictive Modeling of Drug Effects on Signaling Pathways in Diverse Cancer Cell Lines. - Shital Kumar Mishra; Sourav S. Bhowmick; Huey-Eng Chua; Jie Zheng 002 (BCB, 2016)

TENET: A Machine Learning-Based System for Target Characterization in Signaling Networks. - Huey-Eng Chua; Sourav S. Bhowmick; Lisa Tucker-Kellogg; C. Forbes Dewey Jr. (ICDM Workshops, 2016)

FacetsViewer: A Tool for Multi-faceted Decomposition of Complex Networks. - Boon-Siew Seah; Sourav S. Bhowmick; Huey-Eng Chua; Mengxuan Chen; C. Forbes Dewey Jr. (ICDM Workshops, 2016)

TINTIN: Exploiting Target Features for Signaling Network Similarity Computation and Ranking. - Huey-Eng Chua; Sourav S. Bhowmick; Lisa Tucker-Kellogg (BCB, 2017)

VISUAL: Simulation of Visual Subgraph Query Formulation to Enable Automated Performance Benchmarking. - Sourav S. Bhowmick; Huey-Eng Chua; Byron Choi; Curtis E. Dyreson (IEEE Trans. Knowl. Data Eng., 2017)

BOOMER: Blending Visual Formulation and Processing of P -Homomorphic Queries on Large Networks. - Yinglong Song; Huey-Eng Chua; Sourav S. Bhowmick; Byron Choi; Shuigeng Zhou (SIGMOD Conference, 2018)

TROVE: a user-friendly tool for visualizing and analyzing cancer hallmarks in signaling networks. - Huey-Eng Chua; Sourav S. Bhowmick; Jie Zheng 002 (Bioinform., 2018)

CATAPULT: Data-driven Selection of Canned Patterns for Efficient Visual Graph Query Formulation. - Kai Huang 011; Huey-Eng Chua; Sourav S. Bhowmick; Byron Choi; Shuigeng Zhou (SIGMOD Conference, 2019)

AURORA: Data-driven Construction of Visual Graph Query Interfaces for Graph Databases. - Sourav S. Bhowmick; Kai Huang 011; Huey-Eng Chua; Zifeng Yuan; Byron Choi; Shuigeng Zhou (SIGMOD Conference, 2020)

BOOMER: A Tool for Blending Visual P-Homomorphic Queries on Large Networks. - Yinglong Song; Huey-Eng Chua; Sourav S. Bhowmick; Byron Choi; Shuigeng Zhou (SIGMOD Conference, 2020)

LATTE: Visual Construction of Smart Contracts. - Sean Tan; Sourav S. Bhowmick; Huey-Eng Chua; Xiaokui Xiao (SIGMOD Conference, 2020)

MIDAS: Towards Efficient and Effective Maintenance of Canned Patterns in Visual Graph Query Interfaces. - Kai Huang 011; Huey-Eng Chua; Sourav S. Bhowmick; Byron Choi; Shuigeng Zhou (SIGMOD Conference, 2021)

Towards Plug-and-Play Visual Graph Query Interfaces: Data-driven Canned Pattern Selection for Large Networks. - Zifeng Yuan; Huey-Eng Chua; Sourav S. Bhowmick; Zekun Ye; Wook-Shin Han; Byron Choi (Proc. VLDB Endow., 2021)

ArcheGEO: towards improving relevance of gene expression omnibus search results. - Huey-Eng Chua; Lisa Tucker-Kellogg; Sourav S. Bhowmick (BCB, 2022)

PLAYPEN: Plug-and-Play Visual Graph Query Interfaces for Top-down and Bottom-Up Search on Large Networks. - Zifeng Yuan; Huey-Eng Chua; Sourav S. Bhowmick; Zekun Ye; Byron Choi; Wook-Shin Han (SIGMOD Conference, 2022)

MOCHA: A Tool for Visualizing Impact of Operator Choices in Query Execution Plans for Database Education. - Jess Tan; Desmond Yeo; Rachael Neoh; Huey-Eng Chua; Sourav S. Bhowmick (Proc. VLDB Endow., 2022)