An examination of the conservation of surface patch polarity for proteins. - Hugh P. Shanahan; Janet M. Thornton (Bioinform., 2004)

HTHquery: a method for detecting DNA-binding proteins with a helix-turn-helix structural motif. - Carles Ferrer-Costa; Hugh P. Shanahan; Susan Jones; Janet M. Thornton (Bioinform., 2005)

Can we improve on the identification of transcription factor binding sites? - Hugh P. Shanahan (KDD Workshop on Statistical and Relational Learning in Bioinformatics, 2009)

An Overview of Gene Regulation. - Andrew P. Harrison; Hugh P. Shanahan (Approaches in Integrative Bioinformatics, 2014)

A Novel Method to Detect Bias in Short Read NGS Data. - Jamie J. Alnasir; Hugh P. Shanahan (J. Integr. Bioinform., 2017)

Biological Big Bytes: Integrative Analysis of Large Biological Datasets. - Ming Chen 005; Andrew P. Harrison; Hugh P. Shanahan; Yuriy L. Orlov (J. Integr. Bioinform., 2017)

Systems Metagenomics: Applying Systems Biology Thinking to Human Microbiome Analysis. - Golestan Sally Radwan; Hugh P. Shanahan (CMSB, 2018)

Transcriptomics: Quantifying Non-Uniform Read Distribution Using MapReduce. - Jamie J. Alnasir; Hugh P. Shanahan (Int. J. Found. Comput. Sci., 2018)

The FAIR Funder pilot programme to make it easy for funders to require and for grantees to produce FAIR Data. - Peter Wittenburg; Hana Pergl Sustkova; Annalisa Montesanti; Margreet Bloemers; S. H. de Waard; Mark A. Musen; John B. Graybeal; Kristina M. Hettne; Annika Jacobsen; Robert Pergl; Rob W. W. Hooft; Christine Staiger; et al. (CoRR, 2019)

The application of Hadoop in structural bioinformatics. - Jamie J. Alnasir; Hugh P. Shanahan (Briefings Bioinform., 2020)

Helping the Consumers and Producers of Standards, Repositories and Policies to Enable FAIR Data. - Peter McQuilton; Dominique Batista; Oya Beyan; Ramón Granell; Simon J. Coles; Massimiliano Izzo; Allyson L. Lister; Robert Pergl; Philippe Rocca-Serra; Ben Schaap; Hugh P. Shanahan; Milo Thurston; et al. (Data Intell., 2020)

The CODATA-RDA Data Steward School. - Daniel Bangert; Joy Davidson; Steve Diggs; Marjan Grootveld; Hugh P. Shanahan; Shanmugasundaram Venkataraman (Int. J. Digit. Curation, 2020)

"Ethics When You Least Expect It": A Modular Approach to Short Course Data Ethics Instruction. - Louise Bezuidenhout; Robert Quick; Hugh P. Shanahan (Sci. Eng. Ethics, 2020)

A School and a Network: CODATA-RDA Data Science Summer Schools Alumni Survey. - Louise Bezuidenhout; Sara Drummond-Curtis; Bridget Walker; Hugh P. Shanahan; Marcela Alfaro Cordoba (Data Sci. J., 2021)

Progress toward a comprehensive teaching approach to the FAIR data principles. - Hugh P. Shanahan; Nancy Hoebelheinrich; Angus Whyte (Patterns, 2021)

Rethinking the A in FAIR Data: Issues of Data Access and Accessibility in Research. - Hugh P. Shanahan; Louise Bezuidenhout (Frontiers Res. Metrics Anal., 2022)

Foundational Data Science Training for Health Equity Researchers at Minority Serving Institutions: A SoRDS Event. - Robert Quick; Marcela Alfaro Cordoba; Stephen Diggs; Raphael Cobe; Louise Bezuidenhout; Hugh P. Shanahan; Bianca Peterson (ICHI, 2023)

Intra-Exon Motif Correlations as a Proxy Measure for Mean Per-Tile Sequence Quality Data in RNA-Seq. - Jamie J. Alnasir; Hugh P. Shanahan (J. Comput. Biol., 2023)