A knowledge-based genetic algorithm to predict three-dimensional structures of polypeptides. - Márcio Dorn; Mario Inostroza-Ponta; Luciana S. Buriol; Hugo Verli (IEEE Congress on Evolutionary Computation, 2013)

Extension and validation of the GROMOS 53A6glyc parameter set for glycoproteins. - Laercio Pol-Fachin; Hugo Verli; Roberto D. Lins (J. Comput. Chem., 2014)

Homology modeling and molecular dynamics provide structural insights into tospovirus nucleoprotein. - Rayane Nunes Lima; Muhammad Faheem 004; João Alexandre Ribeiro Gonçalves Barbosa; Marcelo Depólo Polêto; Hugo Verli; Fernando Lucas Melo; Renato Oliveira Resende (BMC Bioinform., 2016)

Everyone Is a Protagonist: Residue Conformational Preferences in High-Resolution Protein Structures. - Rodrigo Ligabue-Braun; Bruno Borguesan; Hugo Verli; Mathias J. Krause; Márcio Dorn (J. Comput. Biol., 2018)

All-Hydrocarbon Staples and Their Effect over Peptide Conformation under Different Force Fields. - Bianca Villavicencio; Rodrigo Ligabue-Braun; Hugo Verli (J. Chem. Inf. Model., 2018)

ConfID: an analytical method for conformational characterization of small molecules using molecular dynamics trajectories. - Marcelo Depólo Polêto; Bruno Iochins Grisci; Márcio Dorn; Hugo Verli (Bioinform., 2020)

The Lazy Life of Lipid-Linked Oligosaccharides in All Life Domains. - Pablo R. Arantes; Conrado Pedebos; Marcelo Depólo Polêto; Laercio Pol-Fachin; Hugo Verli (J. Chem. Inf. Model., 2020)

Current Status of Carbohydrates Information in the Protein Data Bank. - João L. de Meirelles; Felipe C. Nepomuceno; Jorge Peña-García; Ricardo Rodríguez-Schmidt; Horacio Pérez Sánchez; Hugo Verli (J. Chem. Inf. Model., 2020)

Rotational Profiler: A Fast, Automated, and Interactive Server to Derive Torsional Dihedral Potentials for Classical Molecular Simulations. - Victor H. Rusu; Denys E. S. Santos; Marcelo Depólo Polêto; Marcelo Galheigo; Antônio Tadeu A. Gomes; Hugo Verli; Thereza A. Soares; Roberto D. Lins (J. Chem. Inf. Model., 2020)

Structural Characteristics of Glycocins: Unraveling the Role of S-Linked Carbohydrates and Other Structural Elements. - Bianca Villavicencio; Rodrigo Ligabue-Braun; Hugo Verli (J. Chem. Inf. Model., 2022)