An object-oriented database for the management of genetic sequences. - Zohra Bellahsene; Hugues Ripoche (BDA, 1994)

Knowledge discovery in a genetic database: the MINOS system. - Hugues Ripoche; Jean Sallantin (HICSS (5), 1995)

JET2 Viewer: a database of predicted multiple, possibly overlapping, protein-protein interaction sites for PDB structures. - Hugues Ripoche; Elodie Laine; Nicoletta Ceres; Alessandra Carbone (Nucleic Acids Res., 2017)

A multi-objective based clustering for inferring BCR clonal lineages from high-throughput B cell repertoire data. - Nika Abdollahi; Lucile Jeusset; Anne Langlois De Septenville; Hugues Ripoche; Frédéric Davi; Juliana S. Bernardes (PLoS Comput. Biol., 2022)