Minimizing Complexity in Cellular Automata Models of Self-Replication. - James A. Reggia; Hui-Hsien Chou; Steven L. Armentrout; Yun Peng 001 (ISMB, 1993)

An Extended Cellular Space Method for Simulating Autocatalytic Oligonucleotides. - Hui-Hsien Chou; James A. Reggia; Rafael Navarro-Gonzalez; Jayoung Wu (Comput. Chem., 1994)

Cellular Automata Models of Self-Replicating Systems. - James A. Reggia; Hui-Hsien Chou; Jason D. Lohn (Adv. Comput., 1998)

Self-Replicating Structures: Evolution, Emergence and Computation. - James A. Reggia; Jason D. Lohn; Hui-Hsien Chou (Artif. Life, 1998)

DNA sequence quality trimming and vector removal. - Hui-Hsien Chou; Michael H. Holmes (Bioinform., 2001)

The Trend Cellular Automata Programming Environment. - Hui-Hsien Chou; Wei Huang; James A. Reggia (Simul., 2002)

Picky: oligo microarray design for large genomes. - Hui-Hsien Chou; An-Ping Hsia; Denise L. Mooney; Patrick S. Schnable (Bioinform., 2004)

Efficient combination of multiple word models for improved sequence comparison. - Xiaoqiu Huang 001; Liang Ye; Hui-Hsien Chou; I-Hsuan Yang; Kun-Mao Chao (Bioinform., 2004)

LUCY2: an interactive DNA sequence quality trimming and vector removal tool. - Song Li; Hui-Hsien Chou (Bioinform., 2004)

Direct calibration of PICKY-designed microarrays. - Hui-Hsien Chou; Arunee Trisiriroj; Sunyoung Park; Yue-Ie C. Hsing; Pamela C. Ronald; Patrick S. Schnable (BMC Bioinform., 2009)

Shared probe design and existing microarray reanalysis using PICKY. - Hui-Hsien Chou (BMC Bioinform., 2010)

E. coli and Agrobacterium non-coding regulatory RNA discovery. - Hyejin Cho; Hui-Hsien Chou (BIBM Workshops, 2011)

Mango: combining and analyzing heterogeneous biological networks. - Jennifer Chang; Hyejin Cho; Hui-Hsien Chou (BioData Min., 2016)

Cavatica: A pipeline for identifying author adoption trends among software or methods. - Jennifer Chang; Hui-Hsien Chou (BIBM, 2017)