Predicting drug efficacy based on the integrated breast cancer pathway model. - Hui Huang 007; Xiaogang Wu; Sara Ibrahim; Marianne McKenzie; Jake Y. Chen (GENSiPS, 2011)

PAGED: a pathway and gene-set enrichment database to enable molecular phenotype discoveries. - Hui Huang 007; Xiaogang Wu; Madhankumar Sonachalam; Sammed N. Mandape; Ragini Pandey; Karl F. MacDorman; Ping Wan; Jake Y. Chen (BMC Bioinform., 2012)

Reordering based integrative expression profiling for microarray classification. - Xiaogang Wu; Hui Huang 007; Madhankumar Sonachalam; Sina Reinhard; Jeffrey Shen; Ragini Pandey; Jake Y. Chen (BMC Bioinform., 2012)

Network Expansion and Pathway Enrichment Analysis towards Biologically Significant Findings from Microarrays. - Xiaogang Wu; Hui Huang 007; Tao Wei; Ragini Pandey; Christoph Reinhard; Shuyu D. Li; Jake Y. Chen (J. Integr. Bioinform., 2012)

SLDR: a computational technique to identify novel genetic regulatory relationships. - Zongliang Yue; Ping Wan; Hui Huang 007; Zhan Xie; Jake Yue Chen (BMC Bioinform., 2014)

DMAP: a connectivity map database to enable identification of novel drug repositioning candidates. - Hui Huang 007; Thanh Nguyen 005; Sara Ibrahim; Sandeep Shantharam; Zongliang Yue; Jake Y. Chen (BMC Bioinform., 2015)