FamPipe: An Automatic Analysis Pipeline for Analyzing Sequencing Data in Families for Disease Studies. - Ren-Hua Chung; Wei-Yun Tsai; Chen-Yu Kang; Po-Ju Yao; Hui-Ju Tsai; Chia-Hsiang Chen (PLoS Comput. Biol., 2016)

Environmental activism in the platform society: Spatial agency in digital maps. - Jing Meng; Yu-Peng Lin; Hui-Ju Tsai (New Media Soc., 2024)

Learning-Based Progression Detection of Alzheimer's Disease Using 3D MRI Images. - Jacky Chung-Hao Wu; Tzu-Chi Chien; Chiung-Chih Chang; Hsin-I Chang; Hui-Ju Tsai; Min-Yu Lan; Nien-Chen Wu; Henry Horng-Shing Lu (Int. J. Intell. Syst., 2025)