deepBase: a database for deeply annotating and mining deep sequencing data. - Jian-Hua Yang; Peng Shao; Hui Zhou 006; Yue-Qin Chen; Liang-Hu Qu (Nucleic Acids Res., 2010)

starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data. - Jian-Hua Yang; Jun-Hao Li; Peng Shao; Hui Zhou 006; Yue-Qin Chen; Liang-Hu Qu (Nucleic Acids Res., 2011)

ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data. - Jian-Hua Yang; Jun-Hao Li; Shan Jiang; Hui Zhou 006; Liang-Hu Qu (Nucleic Acids Res., 2013)

starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data. - Jun-Hao Li; Shun Liu; Hui Zhou 006; Liang-Hu Qu; Jian-Hua Yang (Nucleic Acids Res., 2014)

StarScan: a web server for scanning small RNA targets from degradome sequencing data. - Shun Liu; Jun-Hao Li; Jie Wu 026; Keren Zhou 002; Hui Zhou 006; Jian-Hua Yang; Liang-Hu Qu (Nucleic Acids Res., 2015)

RMBase: a resource for decoding the landscape of RNA modifications from high-throughput sequencing data. - Wen-Ju Sun; Jun-Hao Li; Shun Liu; Jie Wu 026; Hui Zhou 006; Liang-Hu Qu; Jian-Hua Yang (Nucleic Acids Res., 2016)

deepBase v2.0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data. - Ling-Ling Zheng; Jun-Hao Li; Jie Wu 026; Wen-Ju Sun; Shun Liu; Ze-Lin Wang; Hui Zhou 006; Jian-Hua Yang; Liang-Hu Qu (Nucleic Acids Res., 2016)

ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data. - Keren Zhou 002; Shun Liu; Wen-Ju Sun; Ling-Ling Zheng; Hui Zhou 006; Jian-Hua Yang; Liang-Hu Qu (Nucleic Acids Res., 2017)

Applications of RNA Indexes for Precision Oncology in Breast Cancer. - Liming Ma; Zirui Liang; Hui Zhou 006; Liang-Hu Qu (Genom. Proteom. Bioinform., 2018)