Epigenetic Hypothesis Tests for Methylation and Acetylation in a Triple Microarray System. - Lang Li 001; Huidong Shi; Constantin T. Yiannoutsos; Tim Hui-Ming Huang; Kenneth P. Nephew (J. Comput. Biol., 2005)

Relational Analysis of CpG Islands Methylation and Gene Expression in Human Lymphomas Using Possibilistic C-Means Clustering and Modified Cluster Fuzzy Density. - Ozy Sjahputera; James M. Keller; J. Wade Davis; Kristen H. Taylor; Farahnaz Rahmatpanah; Huidong Shi; Derek Anderson; Samuel Blisard; Robert H. Luke III; Mihail Popescu; Gerald C. Arthur; Charles William Caldwell (IEEE ACM Trans. Comput. Biol. Bioinform., 2007)

Predicting DNA Methylation Susceptibility Using CpG Flanking Sequences. - Sun Kim; Meng Li 013; Hyun-il Henry Paik; Kenneth P. Nephew; Huidong Shi; Robin Kramer; Dong Xu; Tim Hui-Ming Huang (Pacific Symposium on Biocomputing, 2008)

PRIMEGENS-v2: genome-wide primer design for analyzing DNA methylation patterns of CpG islands. - Gyan Prakash Srivastava; Juyuan Guo; Huidong Shi; Dong Xu (Bioinform., 2008)

A software package for next-gen bisulfite sequencing data analysis. - Jeong-Hyeon Choi; Dong-Sung Ryu; Suhas Sureshchandra; Huidong Shi; Hwan-Gue Cho (BIBM Workshops, 2011)

New approaches to identify cancer heterogeneity in DNA methylation studies using the lepage test and multinomial logistic regression. - Seongkeon Lee; Youngjun Piao; Huidong Shi; Jeong-Hyeon Choi (CIBCB, 2015)

CAME: identification of chromatin accessibility from nucleosome occupancy and methylome sequencing. - Yongjun Piao; Seongkeon Lee; Eun-Joon Lee; Keith D. Robertson; Huidong Shi (Bioinform., 2017)

Integrative analysis of multiple types of genomic data using an accelerated failure time frailty model. - Shirong Deng; Jie Chen 008; Huidong Shi (Comput. Stat., 2021)

UDA-GS: A cross-center multimodal unsupervised domain adaptation framework for Glioma segmentation. - Zhaoyu Hu; Yuhao Sun; Liuguan Bian; Chun Luo; Junle Zhu; Jin Zhu; Shiting Li; Zheng Zhao; Yuanyuan Wang; Huidong Shi; Zhifeng Shi; Jinhua Yu (Comput. Biol. Medicine, 2025)