HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data. - Huihuang Yan; Jared Evans; Mike Kalmbach; Raymond M. Moore; Sumit Middha; Stanislav Luban; Liguo Wang 002; Aditya Bhagwate; Ying Li; Zhifu Sun; Xianfeng Chen; Jean-Pierre A. Kocher (BMC Bioinform., 2014)

Bioinformatics Strategies for Identifying Regions of Epigenetic Deregulation Associated with Aberrant Transcript Splicing and RNA-editing. - Mia D. Champion; Ryan A. Hlady; Huihuang Yan; Jared Evans; Jeff Nie; Jeong-Heon Lee; James M. Bogenberger; Kannabiran Nandakumar; Jaime I. Dávila; Raymond M. Moore; Asha A. Nair; Daniel R. O'Brien; et al. (BIOINFORMATICS, 2015)

Impact of post-alignment processing in variant discovery from whole exome data. - Shulan Tian; Huihuang Yan; Michael Kalmbach; Susan L. Slager (BMC Bioinform., 2016)

Comparative analysis of de novo assemblers for variation discovery in personal genomes. - Shulan Tian; Huihuang Yan; Eric W. Klee; Michael Kalmbach; Susan L. Slager (Briefings Bioinform., 2018)