A New Approach to Clustering Biological Data Using Message Passing. - Huimin Geng; Dhundy Bastola; Hesham H. Ali (CSB, 2004)

A Dynamic Bayesian Network Model for Hierarchial Classification and its Application in Predicting Yeast Genes Functions. - Xutao Deng; Huimin Geng; Hesham H. Ali (AMCIS, 2005)

Message Passing Clustering with Stochastic Merging Based on Kernel Functions. - Huimin Geng; Xutao Deng; Hesham H. Ali (AMCIS, 2005)

On Clustering Biological Data Using Unsupervised and Semi-Supervised Message Passing. - Huimin Geng; Xutao Deng; Dhundy Bastola; Hesham H. Ali (BIBE, 2005)

Predicting Yeast Gene Function Based on Hidden Markov Models. - Xutao Deng; Huimin Geng; Hesham H. Ali (CATA, 2005)

Learning Yeast Gene Functions from Heterogeneous Sources of Data Using Hybrid Weighted Bayesian Networks. - Xutao Deng; Huimin Geng; Hesham H. Ali (CSB, 2005)

A New Clustering Strategy with Stochastic Merging and Removing Based on Kernel Functions. - Huimin Geng; Hesham H. Ali (CSB Workshops, 2005)

A new clustering algorithm using message passing and its applications in analyzing microarray data. - Huimin Geng; Xutao Deng; Hesham H. Ali (ICMLA, 2005)

Link test - A statistical method for finding prostate cancer biomarkers. - Xutao Deng; Huimin Geng; Dhundy Bastola; Hesham H. Ali (Comput. Biol. Chem., 2006)

Joint Learning of Gene Functions - a Bayesian Network Model Approach. - Xutao Deng; Huimin Geng; Hesham H. Ali (J. Bioinform. Comput. Biol., 2006)

Virtual CGH: Prediction of Novel Regions of Chromosomal Alterations in Tumor from Gene Expression Profiling. - Huimin Geng; Javeed Iqbal; Xutao Deng; Wing C. Chan; Hesham H. Ali (HICSS, 2007)

Dynamics of asynchronous random Boolean networks with asynchrony generated by stochastic processes. - Xutao Deng; Huimin Geng; Mihaela Teodora Matache (Biosyst., 2007)

A Hidden Markov Model Approach for Prediction of Genomic Alterations from Gene Expression Profiling. - Huimin Geng; Hesham H. Ali; Wing C. Chan (ISBRA, 2008)

A Hidden Markov Model approach to predicting yeast gene function from sequential gene expression data. - Xutao Deng; Huimin Geng; Hesham H. Ali (Int. J. Bioinform. Res. Appl., 2008)

Message Passing Clustering (MPC): a knowledge-based framework for clustering under biological constraints. - Huimin Geng; Xutao Deng; Hesham H. Ali (Int. J. Data Min. Bioinform., 2008)

A Computational Method to Predict DNA Copy Number Alterations from Gene Expression Data in Tumor Cases. - Huimin Geng; Wing C. Chan; Hesham H. Ali (HICSS, 2009)