Chromatin architecture reorganization during stem cell differentiation Open. - Jesse R. Dixon; Inkyung Jung; Siddarth Selvaraj; Yin Shen; Jessica E. Antosiewicz-Bourget; Ahyoung Lee; Zhen Ye; Audrey Kim; Nisha Rajagopal; Wei Xie; Yarui Diao; Jing Liang; et al. (Nat., 2015)

Evolutionary Context-Integrated Deep Sequence Modeling for Protein Engineering. - Yunan Luo; Lam Vo; Hantian Ding; Yufeng Su; Yang Liu 097; Wesley Wei Qian; Huimin Zhao 007; Jian Peng 001 (RECOMB, 2020)

TriGORank: A Gene Ontology Enriched Learning-to-Rank Framework for Trigenic Fitness Prediction. - Sahiti Labhishetty; Ismini Lourentzou; Michael Jeffrey Volk; Shekhar Mishra; Huimin Zhao 007; Chengxiang Zhai (BIBM, 2021)

Reaction Miner: An Integrated System for Chemical Reaction Extraction from Textual Data. - Ming Zhong 005; Siru Ouyang; Yizhu Jiao; Priyanka Kargupta; Leo Luo; Yanzhen Shen; Bobby Zhou; Xianrui Zhong; Xuan Liu; Hongxiang Li; Jinfeng Xiao; Minhao Jiang; et al. (EMNLP (Demos), 2023)

Gene-Metabolite Association Prediction with Interactive Knowledge Transfer Enhanced Graph for Metabolite Production. - Kexuan Xin; Qingyun Wang 005; Junyu Chen; Pengfei Yu; Huimin Zhao 007; Heng Ji 001 (BIBM, 2024)

Chem-FINESE: Validating Fine-Grained Few-shot Entity Extraction through Text Reconstruction. - Qingyun Wang 005; Zixuan Zhang; Hongxiang Li; Xuan Liu; Jiawei Han 001; Huimin Zhao 007; Heng Ji 001 (EACL (Findings), 2024)

Molecule Maker Lab Institute: Accelerating, advancing, and democratizing molecular innovation. - Martin D. Burke; Scott E. Denmark; Ying Diao; Jiawei Han 001; Rachel D. Switzky; Huimin Zhao 007 (AI Mag., 2024)

Chemoenzymatic Synthesis Planning Guided by Reaction Type Score. - Hongxiang Li; Xuan Liu; Guangde Jiang; Huimin Zhao 007 (J. Chem. Inf. Model., 2024)