ESSESA: an expert system for elucidation of structures from spectra. 1. Knowledge base of infrared spectra and analysis and interpretation programs. - Huixiao Hong; Xin Xinquan (J. Chem. Inf. Comput. Sci., 1990)

ESSESA: An expert system for structure elucidation from spectra. 3. LNSCS for chemical knowledge representation. - Huixiao Hong; Xin Xinquan (J. Chem. Inf. Comput. Sci., 1992)

ESSESA: An Expert System for Structure Elucidation from Spectra. 4. Canonical Representation of Structures. - Huixiao Hong; Xin Xinquan (J. Chem. Inf. Comput. Sci., 1994)

ESSESA: An Expert System for Structure Elucidation from Spectra. 5. Substructure Constraints from Analysis of First-Order 1H-NMR Spectra. - Huixiao Hong; Xin Xinquan (J. Chem. Inf. Comput. Sci., 1994)

ESSESA: An expert system for structure elucidation from spectra, 6. Substructure constraints from analysis of 13C-NMR spectra. - Huixiao Hong; Han Yinling; Xin Xinquan; Shi Yufeng (J. Chem. Inf. Comput. Sci., 1995)

Decision Forest: Combining the Predictions of Multiple Independent Decision Tree Models. - Weida Tong; Huixiao Hong; Hong Fang; Qian Xie 004; Roger Perkins (J. Chem. Inf. Comput. Sci., 2003)

Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling. - Hong Fang; Weida Tong; Roger Perkins; Leming M. Shi; Huixiao Hong; X. Cao; Qian Xie 004; S. H. Yim; J. M. Ward; Henry C. Pitot; Yvonne P. Dragan (BMC Bioinform., 2005)

Quality control and quality assessment of data from surface-enhanced laser desorption/ionization (SELDI) time-of flight (TOF) mass spectrometry (MS). - Huixiao Hong; Yvonne P. Dragan; Joshua Epstein; Candee Teitel; Bangzheng Chen; Qian Xie 004; Hong Fang; Leming M. Shi; Roger Perkins; Weida Tong (BMC Bioinform., 2005)

Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential. - Leming M. Shi; Weida Tong; Hong Fang; Uwe Scherf; Jing Han 003; Raj K. Puri; Felix W. Frueh; Federico M. Goodsaid; Lei Guo 006; Zhenqiang Su; Tao Han 007; James C. Fuscoe; et al. (BMC Bioinform., 2005)

Microarray scanner calibration curves: characteristics and implications. - Leming M. Shi; Weida Tong; Zhenqiang Su; Tao Han 007; Jing Han 003; Raj K. Puri; Hong Fang; Felix W. Frueh; Federico M. Goodsaid; Lei Guo 006; William S. Branham; James J. Chen; et al. (BMC Bioinform., 2005)

Decision Forest Analysis of 61 Single Nucleotide Polymorphisms in a Case-Control Study of Esophageal Cancer; a novel method. - Qian Xie 004; Luke D. Ratnasinghe; Huixiao Hong; Roger Perkins; Ze-Zhong Tang; Nan Hu; Philip R. Taylor; Weida Tong (BMC Bioinform., 2005)

Spec2D: A Structure Elucidation System Based on 1H NMR and H-H COSY Spectra in Organic Chemistry. - Hideyuki Masui; Huixiao Hong (J. Chem. Inf. Model., 2006)

Consensus analysis of multiple classifiers using non-repetitive variables: Diagnostic application to microarray gene expression data. - Zhenqiang Su; Huixiao Hong; Roger Perkins; Xueguang Shao; Wensheng Cai; Weida Tong (Comput. Biol. Chem., 2007)

Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples. - Huixiao Hong; Zhenqiang Su; Weigong Ge; Leming M. Shi; Roger Perkins; Hong Fang; Joshua Xu; James J. Chen; Tao Han 007; Jim Kaput; James C. Fuscoe; Weida Tong (BMC Bioinform., 2008)

Very Important Pool (VIP) genes - an application for microarray-based molecular signatures. - Zhenqiang Su; Huixiao Hong; Hong Fang; Leming M. Shi; Roger Perkins; Weida Tong (BMC Bioinform., 2008)

Mold2, Molecular Descriptors from 2D Structures for Chemoinformatics and Toxicoinformatics. - Huixiao Hong; Qian Xie 004; Weigong Ge; Feng Qian; Hong Fang; Leming Shi; Zhenqiang Su; Roger Perkins; Weida Tong (J. Chem. Inf. Model., 2008)

Accurate Prediction and Recognition of Subfamilies of G Protein-Coupled Receptors from Amino Acid Sequences. - Huixiao Hong; Qilong Hong; Weida Tong (BIOCOMP, 2009)

The Accurate Prediction of Protein Family from Amino Acid Sequence by Measuring Features of Sequence Fragments. - Huixiao Hong; Qilong Hong; Roger Perkins; Leming M. Shi; Hong Fang; Zhenqiang Su; Yvonne P. Dragan; James C. Fuscoe; Weida Tong (J. Comput. Biol., 2009)

The EDKB: an established knowledge base for endocrine disrupting chemicals. - Don Ding; Lei Xu; Hong Fang; Huixiao Hong; Roger Perkins; Steve Harris; Edward D. Bearden; Leming Shi; Weida Tong (BMC Bioinform., 2010)

Evaluation of gene expression data generated from expired Affymetrix GeneChip® microarrays using MAQC reference RNA samples. - Zhining Wen; Charles Wang; Quan Shi; Ying Huang; Zhenqiang Su; Huixiao Hong; Weida Tong; Leming Shi (BMC Bioinform., 2010)

Two new ArrayTrack libraries for personalized biomedical research. - Joshua Xu; Carolyn Wise; Vijayalakshmi Varma; Hong Fang; Baitang Ning; Huixiao Hong; Weida Tong; Jim Kaput (BMC Bioinform., 2010)

Homology modeling, molecular docking, and molecular dynamics simulations elucidated α-fetoprotein binding modes. - Jie Shen; Wenqian Zhang; Hong Fang; Roger Perkins; Weida Tong; Huixiao Hong (BMC Bioinform., 2013)

Estimating relative noise to signal in DNA microarray data. - Huixiao Hong; Qilong Hong; Jie Liu; Weida Tong; Leming Shi (Int. J. Bioinform. Res. Appl., 2013)

Competitive molecular docking approach for predicting estrogen receptor subtype α agonists and antagonists. - Hui Wen Ng; Wenqian Zhang; Mao Shu; Heng Luo 002; Weigong Ge; Roger Perkins; Weida Tong; Huixiao Hong (BMC Bioinform., 2014)

Whole genome sequencing of 35 individuals provides insights into the genetic architecture of Korean population. - Wenqian Zhang; Joe Meehan; Zhenqiang Su; Hui Wen Ng; Mao Shu; Heng Luo 002; Weigong Ge; Roger Perkins; Weida Tong; Huixiao Hong (BMC Bioinform., 2014)

Understanding and predicting binding between human leukocyte antigens (HLAs) and peptides by network analysis. - Heng Luo 002; Hao Ye; Hui Wen Ng; Leming Shi; Weida Tong; William Mattes; Donna Mendrick; Huixiao Hong (BMC Bioinform., 2015)

Factorial analysis of error correction performance using simulated next-generation sequencing data. - Isaac Akogwu; Nan Wang 002; Chaoyang Zhang; Hwanseok Choi; Huixiao Hong; Ping Gong 001 (BIBM, 2016)

A novel procedure on next generation sequencing data analysis using text mining algorithm. - Weizhong Zhao; James J. Chen; Roger Perkins; Yuping Wang; Zhichao Liu; Huixiao Hong; Weida Tong; Wen Zou (BMC Bioinform., 2016)

Erratum to: A novel procedure on next generation sequencing data analysis using text mining algorithm. - Weizhong Zhao; James J. Chen; Roger Perkins; Yuping Wang; Zhichao Liu; Huixiao Hong; Weida Tong; Wen Zou (BMC Bioinform., 2016)

Development of Nicotinic Acetylcholine Receptor nAChR α7 Binding Activity Prediction Model: Coupling Machine Learning with Competitive Molecular Docking. - Huixiao Hong; Carmine Leggett; Suguna Sakkiah (BCB, 2017)

Individualized network-based drug repositioning infrastructure for precision oncology in the panomics era. - Feixiong Cheng; Huixiao Hong; Sheng-Yong Yang; Yuquan Wei (Briefings Bioinform., 2017)

Deep learning architectures for multi-label classification of intelligent health risk prediction. - Andrew S. Maxwell; Runzhi Li; Bei Yang; Heng Weng; Aihua Ou; Huixiao Hong; Zhaoxian Zhou; Ping Gong 001; Chaoyang Zhang (BMC Bioinform., 2017)

Comparative toxicogenomics of three insensitive munitions constituents 2, 4-dinitroanisole, nitroguanidine and nitrotriazolone in the soil nematode Caenorhabditis elegans. - Ping Gong 001; Keri B. Donohue; Anne M. Mayo; Yuping Wang; Huixiao Hong; Mitchell S. Wilbanks; Natalie D. Barker; Xin Guan; Kurt A. Gust (BMC Syst. Biol., 2018)

In Silico Pharmacoepidemiologic Evaluation of Drug-Induced Cardiovascular Complications Using Combined Classifiers. - Chuipu Cai; Jiansong Fang; Pengfei Guo; Qi Wang; Huixiao Hong; Javid Moslehi; Feixiong Cheng (J. Chem. Inf. Model., 2018)

Similarities and differences between variants called with human reference genome HG19 or HG38. - Bohu Pan; Rebecca Kusko; Wenming Xiao; Yuanting Zheng; Zhichao Liu; Chunlin Xiao; Sugunadevi Sakkiah; Wenjing Guo; Ping Gong 001; Chaoyang Zhang; Weigong Ge; Leming Shi; et al. (BMC Bioinform., 2019)

Correction to: Similarities and differences between variants called with human reference genome HG19 or HG38. - Bohu Pan; Rebecca Kusko; Wenming Xiao; Yuanting Zheng; Zhichao Liu; Chunlin Xiao; Sugunadevi Sakkiah; Wenjing Guo; Ping Gong 001; Chaoyang Zhang; Weigong Ge; Leming Shi; et al. (BMC Bioinform., 2019)

Structure-activity relationship-based chemical classification of highly imbalanced Tox21 datasets. - Gabriel Idakwo; Sundar Thangapandian; Joseph Luttrell IV; Yan Li; Nan Wang 002; Zhaoxian Zhou; Huixiao Hong; Bei Yang; Chaoyang Zhang; Ping Gong 001 (J. Cheminformatics, 2020)

Development of a Nicotinic Acetylcholine Receptor nAChR α7 Binding Activity Prediction Model. - Sugunadevi Sakkiah; Carmine Leggett; Bohu Pan; Wenjing Guo; Luis G. Valerio; Huixiao Hong (J. Chem. Inf. Model., 2020)

Text Fingerprinting and Topic Mining in the Prescription Opioid Use Literature. - Huyen Le; Junxiu Zhou; Weizhong Zhao; Roger Perkins; Weigong Ge; Beverly Lyn-Cook; Henry Francis; Huixiao Hong; Weida Tong; Wen Zou (BIBM, 2021)

Discovering Drug-Drug Associations in the FDA Adverse Event Reporting System Database with Data Mining Approaches. - Weizhong Zhao; Huyen Le; James J. Chen; Hesha J. Duggirala; Richard Forshee; Taxiarchis Botsis; Henry Francis; Huixiao Hong; Weida Tong; Yi-Ting Hwang; Wen Zou (BIBM, 2021)

Predictive Models to Identify Small Molecule Activators and Inhibitors of Opioid Receptors. - Srilatha Sakamuru; Jinghua Zhao 003; Menghang Xia; Huixiao Hong; Anton Simeonov; Iosif I. Vaisman; Ruili Huang (J. Chem. Inf. Model., 2021)

Editorial: Unleashing Innovation on Precision Public Health-Highlights From the MCBIOS and MAQC 2021 Joint Conference. - Ramin Homayouni; Huixiao Hong; Prashanti Manda; Bindu Nanduri; Inimary T. Toby (Frontiers Artif. Intell., 2022)

An autoencoder-based deep learning method for genotype imputation. - Meng Song; Jonathan Greenbaum; Joseph Luttrell IV; Weihua Zhou; Chong Wu; Zhe Luo; Chuan Qiu; Lan Juan Zhao; Kuan-Jui Su; Qing Tian 004; Hui Shen 007; Huixiao Hong; et al. (Frontiers Artif. Intell., 2022)

RxNorm for drug name normalization: a case study of prescription opioids in the FDA adverse events reporting system. - Huyen Le; Ru Chen; Stephen C. Harris; Hong Fang; Beverly Lyn-Cook; Huixiao Hong; Weigong Ge; Paul Rogers; Weida Tong; Wen Zou (Frontiers Bioinform., 2023)

Editorial: Big data and artificial intelligence for genomics and therapeutics - Proceedings of the 19th Annual Meeting of the MidSouth Computational Biology and Bioinformatics Society (MCBIOS). - Huixiao Hong; Inimary Toby-Ogundeji; Robert J. Doerksen; Zhaohui Steve Qin (Frontiers Bioinform., 2024)