Structure-based prediction of DNA-binding proteins by structural alignment and a volume-fraction corrected DFIRE-based energy function. - Huiying Zhao; Yuedong Yang; Yaoqi Zhou (Bioinform., 2010)

Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates. - Yuedong Yang; Eshel Faraggi; Huiying Zhao; Yaoqi Zhou (Bioinform., 2011)

Carbohydrate-binding protein identification by coupling structural similarity searching with binding affinity prediction. - Huiying Zhao; Yuedong Yang; Mark von Itzstein; Yaoqi Zhou (J. Comput. Chem., 2014)

A Novel Cylindrical Representation for Characterizing Intrinsic Properties of Protein Sequences. - Jia-Feng Yu; Xianghua Dou; Hong-Bo Wang; Xiao Sun; Huiying Zhao; Ji-Hua Wang (J. Chem. Inf. Model., 2015)

Multi-Repeated Projection Lithography for High-Precision Linear Scale Based on Average Homogenization Effect. - Dongxu Ren; Huiying Zhao; Chupeng Zhang; Daocheng Yuan; Jianpu Xi; Xueliang Zhu; Xinxing Ban; Longchao Dong; Yawen Gu; Chunye Jiang (Sensors, 2016)

Equivalent modeling and simulation for PV system on dynamic clustering equivalent strategy. - Hang Meng; Xiaohui Ye; Mingyu Yang; Xinli Song; Zhida Su; Wenzhuo Liu; Lingtong Luo; Huiying Zhao (IECON, 2017)

Aspheric Surface Measurement Using Capacitive Sensors. - Daocheng Yuan; Huiying Zhao; Xin Tao 005; Shaobo Li; Xueliang Zhu; Chupeng Zhang (Sensors, 2017)

EVLncRNAs: a manually curated database for long non-coding RNAs validated by low-throughput experiments. - Bailing Zhou; Huiying Zhao; Jia-Feng Yu; Chengang Guo; Xianghua Dou; Feng Song; Guodong Hu; Zanxia Cao; Yuanxu Qu; Yuedong Yang; Yaoqi Zhou; Jihua Wang (Nucleic Acids Res., 2018)

Alignment Method for Linear-Scale Projection Lithography Based on CCD Image Analysis. - Dongxu Ren; Zexiang Zhao; Jianpu Xi; Bin Li; Zhengfeng Li; Huiying Zhao; Lujun Cui; Hang Xu (Sensors, 2018)

DLIGAND2: an improved knowledge-based energy function for protein-ligand interactions using the distance-scaled, finite, ideal-gas reference state. - Pin Chen; Yaobin Ke; Yutong Lu; Yunfei Du; Jiahui Li 008; Hui Yan; Huiying Zhao; Yaoqi Zhou; Yuedong Yang (J. Cheminformatics, 2019)

Voltage and Frequency Regulation of Microgrid With Battery Energy Storage Systems. - Huiying Zhao; Mingguo Hong; Wei Lin 001; Kenneth A. Loparo (IEEE Trans. Smart Grid, 2019)

Deep Learning Based Prediction Towards Designing A Smart Building Assistant System. - Ankur Sarker; Fan Yao; Haiying Shen; Huiying Zhao; Haoran Zhu; Haroon Lone; Laura Barnes; Brad Campbell; Mitchel Rosen (MASS, 2020)

Accurate prediction of genome-wide RNA secondary structure profile based on extreme gradient boosting. - Yaobin Ke; Jiahua Rao; Huiying Zhao; Yutong Lu; Nong Xiao 001; Yuedong Yang (Bioinform., 2020)

SPOT-Fold: Fragment-Free Protein Structure Prediction Guided by Predicted Backbone Structure and Contact Map. - Yufeng Cai; Xiongjun Li; Zhe Sun; Yutong Lu; Huiying Zhao; Jack Hanson; Kuldip K. Paliwal; Thomas Litfin; Yaoqi Zhou; Yuedong Yang (J. Comput. Chem., 2020)

To Improve Protein Sequence Profile Prediction through Image Captioning on Pairwise Residue Distance Map. - Sheng Chen; Zhe Sun; Lihua Lin; Zifeng Liu; Xun Liu; Yutian Chong; Yutong Lu; Huiying Zhao; Yuedong Yang (J. Chem. Inf. Model., 2020)

DStruBTarget: Integrating Binding Affinity with Structure Similarity for Ligand-Binding Protein Prediction. - Cong Fan; Ping-pui Wong; Huiying Zhao (J. Chem. Inf. Model., 2020)

Development of a global positioning system data-based trip-purpose inference method for hazardous materials transportation management. - Huiying Zhao; Dalin Qian; Ying Lv; Bo Zhang; Rongyu Liang (J. Intell. Transp. Syst., 2020)

DGAT-onco: A differential analysis method to detect oncogenes by integrating functional information of mutations. - Haoyang Zhang; Junkang Wei; Zifeng Liu; Xun Liu; Yutian Chong; Yutong Lu; Huiying Zhao; Yuedong Yang (BIBM, 2021)

scAdapt: virtual adversarial domain adaptation network for single cell RNA-seq data classification across platforms and species. - Xiang Zhou; Hua Chai; Yuansong Zeng; Huiying Zhao; Yuedong Yang (Briefings Bioinform., 2021)

Structure-aware protein-protein interaction site prediction using deep graph convolutional network. - Qianmu Yuan; Jianwen Chen; Huiying Zhao; Yaoqi Zhou; Yuedong Yang (Bioinform., 2021)

Integrating multi-omics data through deep learning for accurate cancer prognosis prediction. - Hua Chai; Xiang Zhou; Zhongyue Zhang; Jiahua Rao; Huiying Zhao; Yuedong Yang (Comput. Biol. Medicine, 2021)

Structure-aware protein solubility prediction from sequence through graph convolutional network and predicted contact map. - Jianwen Chen; Shuangjia Zheng; Huiying Zhao; Yuedong Yang (J. Cheminformatics, 2021)

EVLncRNAs 2.0: an updated database of manually curated functional long non-coding RNAs validated by low-throughput experiments. - Bailing Zhou; Baohua Ji; Kui Liu; Guodong Hu; Fei Wang; Qingshuai Chen; Ru Yu; Pingping Huang; Jing Ren; Chengang Guo; Huiying Zhao; Hongmei Zhang; et al. (Nucleic Acids Res., 2021)

Deep Learning Enables Accurate Diagnosis of Novel Coronavirus (COVID-19) With CT Images. - Ying Song; Shuangjia Zheng; Liang Li; Xiang Zhang; Xiaodong Zhang; Ziwang Huang; Jianwen Chen; Ruixuan Wang; Huiying Zhao; Yutian Chong; Jun Shen 008; Yunfei Zha; et al. (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Identifying Patient Subgroups with Different Mortality Risks in ICU Based on Dynamically Acquired Clinical Data. - Zhilong Zhang; Guilan Kong; Shuai Jin; Huiying Zhao (AMIA, 2022)

Accurately Identifying Coronary Atherosclerotic Heart Disease through Merged Beats of Electrocardiogram. - Xinfeng Wang; Mengling Qi; Chengzhi Dong; Haoyang Zhang; Yuedong Yang; Huiying Zhao (BIBM, 2022)

Genetic and phenotypic relationships between coronary atherosclerotic heart disease and electrocardiographic traits. - Xinfeng Wang; Haoyang Zhang; Xuehao Xiu; Mengling Qi; Yuedong Yang; Huiying Zhao (BIBM, 2022)

Learning Optimal Treatment Strategies for Sepsis Using Offline Reinforcement Learning in Continuous Space. - Zeyu Wang; Huiying Zhao; Peng Ren; Yuxi Zhou; Ming Sheng (HIS, 2022)

Capturing large genomic contexts for accurately predicting enhancer-promoter interactions. - Ken Chen 006; Huiying Zhao; Yuedong Yang (Briefings Bioinform., 2022)

AlphaFold2-aware protein-DNA binding site prediction using graph transformer. - Qianmu Yuan; Sheng Chen; Jiahua Rao; Shuangjia Zheng; Huiying Zhao; Yuedong Yang (Briefings Bioinform., 2022)

Alignment-free metal ion-binding site prediction from protein sequence through pretrained language model and multi-task learning. - Qianmu Yuan; Sheng Chen; Yu Wang 027; Huiying Zhao; Yuedong Yang (Briefings Bioinform., 2022)

A coarse-refine segmentation network for COVID-19 CT images. - Ziwang Huang; Liang Li; Xiang Zhang; Ying Song; Jianwen Chen; Huiying Zhao; Yutian Chong; Hejun Wu; Yuedong Yang; Jun Shen 008; Yunfei Zha (IET Image Process., 2022)

To Improve Prediction of Binding Residues With DNA, RNA, Carbohydrate, and Peptide Via Multi-Task Deep Neural Networks. - Zhe Sun; Shuangjia Zheng; Huiying Zhao; Zhangming Niu; Yutong Lu; Yi Pan 001; Yuedong Yang (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Accurately Identifying Muscle-Invasive Bladder Cancer from MRI via Weakly Supervised Learning. - Fudan Zheng; Yuedong Yang; Tianxin Lin; Shaoxu Wu; Yong Li; Yutong Lu; Ying Song; Zhiguang Chen 001; Huiying Zhao (BIBM, 2023)

Temporal Semantic Attention Network for Aspect-Based Sentiment Analysis. - Bin Yang 038; Xinyang Tong; Ying Xing; Qi Shen; Huiying Zhao; Zhipu Xie (DEXA (2), 2023)

Enhancing Clustering Performance in Sepsis Time Series Data Using Gravity Field. - Rui Hao; Ming Sheng; Yong Zhang; Huiying Zhao; Chenxiao Hao; Wenyao Li; Luoxi Wang; Chao Li (HIS, 2023)

Interventions to Reduce Misinformation Dissemination on Social Media: A Systematic Literature Review. - Rui Gu; Huiying Zhao; Chang Zhou (PACIS, 2023)

Multi-Granularity Cross-Attention Network for Visual Question Answering. - Yue Wang; Wei Gao; Xinzhou Cheng; Xin Wang; Huiying Zhao; Zhipu Xie; Lexi Xu (TrustCom, 2023)

Identifying Subgroups of ICU Patients Using End-to-End Multivariate Time-Series Clustering Algorithm Based on Real-World Vital Signs Data. - Tongyue Shi; Zhilong Zhang; Wentie Liu; Junhua Fang; Jianguo Hao; Shuai Jin; Huiying Zhao; Guilan Kong (CoRR, 2023)

Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion. - Qianmu Yuan; Junjie Xie; Jiancong Xie; Huiying Zhao; Yuedong Yang (Briefings Bioinform., 2023)

Accurately identifying nucleic-acid-binding sites through geometric graph learning on language model predicted structures. - Yidong Song; Qianmu Yuan; Huiying Zhao; Yuedong Yang (Briefings Bioinform., 2023)

Inferring the genetic relationship between brain imaging-derived phenotypes and risk of complex diseases by Mendelian randomization and genome-wide colocalization. - Siying Lin; Haoyang Zhang; Mengling Qi; David N. Cooper; Yuedong Yang; Yuanhao Yang; Huiying Zhao (NeuroImage, 2023)

LTGAN: Multi-label Time-Series GAN with Constraints for Electronic Health Records Generation. - Yi Luo; Ming Sheng; Xianbo Liu; Kaiyuan Wang; Yong Zhang; Huiying Zhao (HIS, 2024)

Improving the Performance of Intelligent Photo Compliance Detection Method Based on Diffusion Model for Telecom User Management. - Huiying Zhao; Jie Li; Jieqiong Zhang; Xin Wang; Li Xia (ICIC (LNAI 6), 2024)

Locating the Root Cause of Poor Coverage in Mobile Communication Networks Based on Spatio-temporal Graph Message Propagation. - Zhipu Xie; Bin Yang 038; Jinchao Huang 001; Huiying Zhao; Lexi Xu; Yue Wang; Xin Wang; Ruiqi Liu (IWCMC, 2024)

Cross-Layer Alarm Association Rules Discovery of Cloud-Network based on Knowledge Graph. - Huiying Zhao; Hongwu Li; Bin Wu; Ruiqi Liu; Lexi Xu; Bingming Huang; Zhipu Xie; Xinzhou Cheng (IWCMC, 2024)

Applying image features of proximal paracancerous tissues in predicting prognosis of patients with hepatocellular carcinoma. - Siying Lin; Juanjuan Yong; Lei Zhang; Xiaolong Chen; Liang Qiao; Weidong Pan; Yuedong Yang; Huiying Zhao (Comput. Biol. Medicine, 2024)

Stochastic Parrots or ICU Experts? Large Language Models in Critical Care Medicine: A Scoping Review. - Tongyue Shi; Jun Ma; Zihan Yu; Haowei Xu; Minqi Xiong; Meirong Xiao; Yilin Li; Huiying Zhao; Guilan Kong (CoRR, 2024)

Predicting disease-gene associations through self-supervised mutual infomax graph convolution network. - Jiancong Xie; Jiahua Rao; Junjie Xie; Huiying Zhao; Yuedong Yang (Comput. Biol. Medicine, 2024)

An uncertainty-based interpretable deep learning framework for predicting breast cancer outcome. - Hua Chai; Siyin Lin; Junqi Lin; Minfan He; Yuedong Yang; Yongzhong OuYang; Huiying Zhao (BMC Bioinform., 2024)