Design Considerations for a Web-based Database System of ELISpot Assay in Immunological Research. - Jingming Ma; Tim Mosmann; Hulin Wu (AMIA, 2005)

Discretization Approach and Nonparametric Modeling for Long-Term HIV Dynamic Model. - Jianwei Chen; Jin-Ting Zhang; Hulin Wu (ICCSA (4), 2005)

DEDiscover: A Computation and Simulation Tool for HIV Viral Fitness Research. - Hulin Wu; Hongyu Miao 001; Gregory R. Warnes; Canglin Wu; Alain LeBlanc; Carrie Dykes; Lisa M. Demeter (BMEI (1), 2008)

vFitness: a web-based computing tool for improving estimation of in vitro HIV-1 fitness experiments. - Jingming Ma; Carrie Dykes; Tao Wu; Yangxin Huang; Lisa M. Demeter; Hulin Wu (BMC Bioinform., 2010)

On Identifiability of Nonlinear ODE Models and Applications in Viral Dynamics. - Hongyu Miao 001; Xiaohua Xia; Alan S. Perelson; Hulin Wu (SIAM Rev., 2011)

The impact of quantile and rank normalization procedures on the testing power of gene differential expression analysis. - Xing Qiu; Hulin Wu; Rui Hu 004 (BMC Bioinform., 2013)

More powerful significant testing for time course gene expression data using functional principal component analysis approaches. - Shuang Wu; Hulin Wu (BMC Bioinform., 2013)

Directional histogram ratio at random probes: A local thresholding criterion for capillary images. - Na Lu; Jharon N. Silva; Yu Gu; Scott Gerber; Hulin Wu; Harris A. Gelbard; Stephen Dewhurst; Hongyu Miao 001 (Pattern Recognit., 2013)

Systematic identification of transcriptional and post-transcriptional regulations in human respiratory epithelial cells during influenza A virus infection. - Zhi-Ping Liu; Hulin Wu; Jian Zhu; Hongyu Miao 001 (BMC Bioinform., 2014)

Parameter estimation for a type of nonlinear stochastic models observed with error. - Wei Gu; Hulin Wu; Hongyu Miao 001; Hongqi Xue (Comput. Stat. Data Anal., 2014)

RegNetwork: an integrated database of transcriptional and post-transcriptional regulatory networks in human and mouse. - Zhi-Ping Liu; Canglin Wu; Hongyu Miao 001; Hulin Wu (Database J. Biol. Databases Curation, 2015)

Capillary extraction by detecting polarity in circular profiles. - Na Lu; Jharon N. Silva; Yu Gu; Hulin Wu; Harris A. Gelbard; Stephen Dewhurst; Hongyu Miao 001 (IET Image Process., 2016)

Identifying the dynamic gene regulatory network during latent HIV-1 reactivation using high-dimensional ordinary differential equations. - Jaejoon Song; Michelle Carey; Hongjian Zhu; Hongyu Miao 001; Juan Camilo Ramírez; Hulin Wu (Int. J. Comput. Biol. Drug Des., 2018)

A study of generalizability of recurrent neural network-based predictive models for heart failure onset risk using a large and heterogeneous EHR data set. - Laila Rasmy; Yonghui Wu; Ningtao Wang; Xin Geng; W. Jim Zheng; Fei Wang 001; Hulin Wu; Hua Xu 001; Degui Zhi (J. Biomed. Informatics, 2018)

A Dataset Recommendation System for Researchers based on Publications. - Braja Gopal Patra; Kirk Roberts; Hulin Wu (AMIA, 2019)

Restructured GEO: restructuring Gene Expression Omnibus metadata for genome dynamics analysis. - Guocai Chen; Juan Camilo Ramírez; Nan Deng; Xing Qiu; Canglin Wu; W. Jim Zheng; Hulin Wu (Database J. Biol. Databases Curation, 2019)

A content-based dataset recommendation system for researchers - a case study on Gene Expression Omnibus (GEO) repository. - Braja Gopal Patra; Kirk Roberts; Hulin Wu (Database J. Biol. Databases Curation, 2020)

An informatics research platform to make public gene expression time-course datasets reusable for more scientific discoveries. - Braja Gopal Patra; Babak Soltanalizadeh; Nan Deng; Leqing Wu; Vahed Maroufy; Canglin Wu; W. Jim Zheng; Kirk Roberts; Hulin Wu; Ashraf Yaseen (Database J. Biol. Databases Curation, 2020)

Modelling of hypoxia gene expression for three different cancer cell lines. - Babak Soltanalizadeh; Erika Gonzalez Rodriguez; Vahed Maroufy; W. Jim Zheng; Hulin Wu (Int. J. Comput. Biol. Drug Des., 2020)

A content-based literature recommendation system for datasets to improve data reusability - A case study on Gene Expression Omnibus (GEO) datasets. - Braja Gopal Patra; Vahed Maroufy; Babak Soltanalizadeh; Nan Deng; W. Jim Zheng; Kirk Roberts; Hulin Wu (J. Biomed. Informatics, 2020)

Sensitivity Analysis of a BERT-based scholarly recommendation system. - Jie Zhu; Hulin Wu; Ashraf Yaseen (FLAIRS, 2022)

Identifiability analysis of linear ordinary differential equation systems with a single trajectory. - Xing Qiu; Tao Xu; Babak Soltanalizadeh; Hulin Wu (Appl. Math. Comput., 2022)

ImmuneData: an integrated data discovery system for immunology data repositories. - Nan Deng; Canglin Wu; Ashraf Yaseen; Hulin Wu (Database J. Biol. Databases Curation, 2022)

Neural Generalized Ordinary Differential Equations with Layer-varying Parameters. - Duo Yu; Hongyu Miao 001; Hulin Wu (CoRR, 2022)

Erratum: On Identifiability of Nonlinear ODE Models and Applications in Viral Dynamics. - Hongyu Miao 001; Alan S. Perelson; Hulin Wu (SIAM Rev., 2023)

Scholarly recommendation systems: a literature survey. - Zitong Zhang; Braja Gopal Patra; Ashraf Yaseen; Jie Zhu; Rachit Sabharwal; Kirk Roberts; Tru Cao; Hulin Wu (Knowl. Inf. Syst., 2023)

A New Approach to Discovering HIV Symptom and Patient Clusters Using CNICS Data and Topic Modeling. - Tru Cao; Weilu Zhao; Hulin Wu; Thomas Giordano; Maile Karris; Sonia Napravnik; Meagan Whisenant; Veronica Brady; Greer Burkholder; Katerina Christopoulos; Mari M. Kitahata; Edward Cachay; et al. (BHI, 2024)

Scholarly recommendation system for NIH funded grants based on biomedical word embedding models. - Zitong Zhang; Ashraf Yaseen; Hulin Wu (Nat. Lang. Process. J., 2024)

6G IoV Networks Driven by RF Digital Twin Modeling. - Zengcan Liu; Houjun Sun; Gintare Marine; Hulin Wu (IEEE Trans. Intell. Transp. Syst., 2024)