MIA: Multi-cohort Integrated Analysis for Biomarker Identification. - Brian Marks; Nina Hees; Hung Nguyen 005; Tin Nguyen 001 (BCB, 2018)

MGKA: A genetic algorithm-based clustering technique for genomic data. - Hung Nguyen 005; Sushil J. Louis; Tin Nguyen 001 (CEC, 2019)

RIA: a novel Regression-based Imputation Approach for single-cell RNA sequencing. - Bang Tran; Duc Tran; Hung Nguyen 005; Nam Sy Vo; Tin Nguyen 001 (KSE, 2019)

PINSPlus: a tool for tumor subtype discovery in integrated genomic data. - Hung Nguyen 005; Sangam Shrestha; Sorin Draghici; Tin Nguyen 001 (Bioinform., 2019)

Disease subtyping using community detection from consensus networks. - Hung Nguyen 005; Bang Tran; Duc Tran; Quang-Huy Nguyen; Duc-Hau Le; Tin Nguyen 001 (KSE, 2020)

Consensus Subspace Clustering. - Nathan Thom; Hung Nguyen 005; Emily M. Hand (ICTAI, 2021)

Single-cell RNA sequencing data imputation using similarity preserving network. - Duc Tran; Hung Nguyen 005; Frederick C. Harris Jr.; Tin Nguyen 001 (KSE, 2021)

A comprehensive survey of regulatory network inference methods using single cell RNA sequencing data. - Hung Nguyen 005; Duc Tran; Bang Tran; Bahadir Pehlivan; Tin Nguyen 001 (Briefings Bioinform., 2021)

CPA: a web-based platform for consensus pathway analysis and interactive visualization. - Hung Nguyen 005; Duc Tran; Jonathan M. Galazka; Sylvain V. Costes; Afshin Beheshti; Juli Petereit; Sorin Draghici; Tin Nguyen 001 (Nucleic Acids Res., 2021)

DWEN: A novel method for accurate estimation of cell type compositions from bulk data samples. - Duc Tran; Ha Nguyen; Hung Nguyen 005; Tin Nguyen 001 (KSE, 2022)

CCPA: cloud-based, self-learning modules for consensus pathway analysis using GO, KEGG and Reactome. - Ha Nguyen; Van-Dung Pham; Hung Nguyen 005; Bang Tran; Juli Petereit; Tin Nguyen 001 (Briefings Bioinform., 2024)